BiocStyle
This package is for version 3.2 of Bioconductor;
for the stable, up-to-date release version, see
BiocStyle.
Standard styles for vignettes and other Bioconductor documents
Bioconductor version: 3.2
Provides standard formatting styles for Bioconductor PDF and HTML documents. Package vignettes illustrate use and functionality.
Author: Martin Morgan, Andrzej Oleś, Wolfgang Huber
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("BiocStyle")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiocStyle")
Documentation
To view documentation for the version of this package installed
in your system, start R and enter:
browseVignettes("BiocStyle")
HTML
Bioconductor style for HTML documents
Details
Version
1.8.0
In Bioconductor since
BioC 2.13 (R-3.0) (2.5 years)
License
Artistic-2.0
Depends
Imports
LinkingTo
SystemRequirements
Enhances
Suggests Me
ABAData,
ABAEnrichment,
affycoretools,
AllelicImbalance,
AnnotationDbi,
AnnotationForge,
AnnotationHub,
AnnotationHubData,
arrayQualityMetrics,
ASGSCA,
bamsignals,
BayesPeak,
baySeq,
beadarray,
BeadDataPackR,
bigmemoryExtras,
bioassayR,
BiocParallel,
BitSeq,
blima,
blimaTestingData,
BrowserViz,
BrowserVizDemo,
bsseq,
CAFE,
CAnD,
Cardinal,
CardinalWorkflows,
ccrepe,
CexoR,
ChemmineDrugs,
ChemmineOB,
ChemmineR,
ChIPComp,
ChIPpeakAnno,
ChIPQC,
ChIPseeker,
ClassifyR,
cleanUpdTSeq,
cleaver,
clipper,
clusterProfiler,
CNEr,
CNPBayes,
coMET,
compcodeR,
conumee,
CopyhelpeR,
CopywriteR,
CoRegNet,
COSMIC.67,
cosmiq,
cpvSNP,
CRISPRseek,
curatedBladderData,
curatedCRCData,
curatedOvarianData,
dagLogo,
DAPAR,
DChIPRep,
DEGreport,
derfinder,
derfinderHelper,
derfinderPlot,
DESeq2,
DEXSeq,
DiffBind,
DmelSGI,
DNABarcodes,
DOSE,
DSS,
dupRadar,
easyRNASeq,
EBImage,
EDASeq,
eiR,
ELMER,
ELMER.data,
EnrichmentBrowser,
ensembldb,
erma,
fCI,
flowcatchR,
flowMap,
FlowSOM,
fmcsR,
FourCSeq,
genefilter,
GeneOverlap,
GenomeInfoDb,
GenomicAlignments,
GenomicFeatures,
GenomicFiles,
GenomicInteractions,
GenomicRanges,
GenomicTuples,
genoset,
ggbio,
GOexpress,
GoogleGenomics,
GOSemSim,
gQTLBase,
gQTLstats,
graphite,
GreyListChIP,
groHMM,
GSAR,
GUIDEseq,
Gviz,
HD2013SGI,
HIBAG,
Hiiragi2013,
HiTC,
hpar,
HTSFilter,
iGC,
illuminaio,
imageHTS,
Imetagene,
immunoClust,
InPAS,
INSPEcT,
IONiseR,
IVAS,
LowMACA,
M3D,
mAPKL,
MatrixRider,
MBASED,
mdgsa,
MEAL,
MEDIPS,
messina,
metagene,
metaX,
MethylAid,
MethylAidData,
MethylMix,
minionSummaryData,
miRcomp,
missMethyl,
mogsa,
motifbreakR,
motifStack,
mQTL.NMR,
MSnbase,
MSnID,
mygene,
myvariant,
mzR,
NanoStringDiff,
NanoStringQCPro,
NarrowPeaks,
netbiov,
nethet,
nondetects,
npGSEA,
oligo,
omicade4,
OmicsMarkeR,
OncoSimulR,
OperaMate,
Oscope,
PAA,
PANTHER.db,
parathyroidSE,
Path2PPI,
paxtoolsr,
Pbase,
PGA,
plethy,
Polyfit,
pRoloc,
PROPER,
Prostar,
ProteomicsAnnotationHubData,
proteoQC,
PSEA,
PWMEnrich,
qcmetrics,
qpgraph,
quantro,
QuasR,
R3CPET,
rain,
Rcade,
rcellminer,
rcellminerData,
rCGH,
RCyjs,
ReactomePA,
RefNet,
regioneR,
regionReport,
ReQON,
RforProteomics,
rfPred,
RGSEA,
rhdf5,
Rhtslib,
RiboProfiling,
riboSeqR,
RNAprobR,
rnaseqcomp,
RnaSeqSampleSize,
RnaSeqSampleSizeData,
Rnits,
rols,
ropls,
rpx,
Rsamtools,
RTCGAToolbox,
RUVcorr,
RUVSeq,
sangerseqR,
sapFinder,
sbgr,
SCLCBam,
segmentSeq,
seqPattern,
seqplots,
SeqVarTools,
SGSeq,
shinyMethyl,
ShortRead,
SigCheck,
SigFuge,
simulatorZ,
sincell,
SNPhood,
SNPhoodData,
soGGi,
specL,
SSPA,
STAN,
STATegRa,
SummarizedExperiment,
sva,
synapter,
systemPipeR,
systemPipeRdata,
TCGAbiolinks,
TFBSTools,
tigre,
TimerQuant,
TPP,
tracktables,
trackViewer,
traseR,
TRONCO,
TurboNorm,
variancePartition,
VariantAnnotation,
VariantFiltering,
XBSeq,
zebrafishRNASeq
Package Archives
Follow
Installation instructions to use this
package in your R session.