To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Cardinal")

In most cases, you don't need to download the package archive at all.

Cardinal

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see Cardinal.

A mass spectrometry imaging toolbox for statistical analysis

Bioconductor version: 3.2

Implements statistical & computational tools for analyzing mass spectrometry imaging datasets, including methods for efficient pre-processing, spatial segmentation, and classification.

Author: Kyle D. Bemis <kbemis at purdue.edu>

Maintainer: Kyle D. Bemis <kbemis at purdue.edu>

Citation (from within R, enter citation("Cardinal")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Cardinal")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("Cardinal")
PDF Cardinal design and development
PDF Cardinal: Analytic tools for mass spectrometry imaging
PDF Reference Manual
Text NEWS

Details

biocViews Classification, Clustering, ImagingMassSpectrometry, Infrastructure, Lipidomics, MassSpectrometry, Normalization, Proteomics, Software
Version 1.2.1
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License Artistic-2.0
Depends BiocGenerics, Biobase, graphics, methods, stats, ProtGenerics
Imports grid, irlba, lattice, signal, sp, stats4, utils
LinkingTo
Suggests BiocStyle, testthat
SystemRequirements
Enhances
URL http://www.cardinalmsi.org
Depends On Me CardinalWorkflows
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Cardinal_1.2.1.tar.gz
Windows Binary Cardinal_1.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Cardinal_1.1.0.tgz
Mac OS X 10.9 (Mavericks) Cardinal_1.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Cardinal/tree/release-3.2
Package Short Url http://bioconductor.org/packages/Cardinal/
Package Downloads Report Download Stats

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