To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Oscope")
In most cases, you don't need to download the package archive at all.
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see Oscope.
Bioconductor version: 3.2
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles of oscillating genes in an unsynchronized single cell RNA-seq experiment. The Oscope pipeline includes three modules: a sine model module to search for candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators into groups; and an extended nearest insertion module to recover the base cycle order for each oscillator group.
Author: Ning Leng
Maintainer: Ning Leng <lengning1 at gmail.com>
Citation (from within R,
enter citation("Oscope")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Oscope")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Oscope")
Follow Installation instructions to use this package in your R session.
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