To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("conumee")

In most cases, you don't need to download the package archive at all.

conumee

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see conumee.

Enhanced copy-number variation analysis using Illumina 450k methylation arrays

Bioconductor version: 3.2

This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k methylation arrays.

Author: Volker Hovestadt, Marc Zapatka

Maintainer: Volker Hovestadt <conumee at hovestadt.bio>

Citation (from within R, enter citation("conumee")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("conumee")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("conumee")
HTML The conumee vignette
PDF Reference Manual
Text NEWS

Details

biocViews CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software
Version 1.2.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL (>= 2)
Depends R (>= 3.0), minfi, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19
Imports methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, GenomeInfoDb
LinkingTo
Suggests BiocStyle, knitr, rmarkdown, minfiData, CopyNumber450kData, RCurl
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source conumee_1.2.0.tar.gz
Windows Binary conumee_1.2.0.zip
Mac OS X 10.6 (Snow Leopard) conumee_1.2.0.tgz
Mac OS X 10.9 (Mavericks) conumee_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/conumee/tree/release-3.2
Package Short Url http://bioconductor.org/packages/conumee/
Package Downloads Report Download Stats

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