To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

In most cases, you don't need to download the package archive at all.

DNAcopy

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see DNAcopy.

DNA copy number data analysis

Bioconductor version: 3.2

Implements the circular binary segmentation (CBS) algorithm to segment DNA copy number data and identify genomic regions with abnormal copy number.

Author: Venkatraman E. Seshan, Adam Olshen

Maintainer: Venkatraman E. Seshan <seshanv at mskcc.org>

Citation (from within R, enter citation("DNAcopy")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("DNAcopy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("DNAcopy")
PDF DNAcopy
PDF Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.44.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 11 years)
License GPL (>= 2)
Depends
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me CGHcall, cghMCR, Clonality, CopyNumber450k, CRImage, snapCGH, SomatiCA
Imports Me ADaCGH2, ArrayTV, ChAMP, Clonality, cn.farms, CNAnorm, CNVrd2, conumee, CopywriteR, GWASTools, MEDIPS, MinimumDistance, QDNAseq, rCGH, Repitools, snapCGH, SomatiCA
Suggests Me beadarraySNP, Clonality, cn.mops, fastseg, genoset
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source DNAcopy_1.44.0.tar.gz
Windows Binary DNAcopy_1.44.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) DNAcopy_1.44.0.tgz
Mac OS X 10.9 (Mavericks) DNAcopy_1.44.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/DNAcopy/tree/release-3.2
Package Short Url http://bioconductor.org/packages/DNAcopy/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

AltStyle によって変換されたページ (->オリジナル) /