To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChAMP")
In most cases, you don't need to download the package archive at all.
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see ChAMP.
Bioconductor version: 3.2
The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number aberrations. In addition their is a method to help calculate hmC using BS and oxBS samples.
Author: Tiffany Morris [cre, aut], Lee Butcher [ctb], Andrew Feber [ctb], Andrew Teschendorff [ctb], Ankur Chakravarthy [ctb]
Maintainer: Tiffany Morris <champ450k at gmail.com>
Citation (from within R,
enter citation("ChAMP")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChAMP")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChAMP")
Follow Installation instructions to use this package in your R session.
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