To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Pbase")

In most cases, you don't need to download the package archive at all.

Pbase

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see Pbase.

Manipulating and exploring protein and proteomics data

Bioconductor version: 3.2

A set of classes and functions to investigate and understand protein sequence data in the context of a proteomics experiment.

Author: Laurent Gatto [aut], Sebastian Gibb [aut, cre]

Maintainer: Sebastian Gibb <mail at sebastiangibb.de>, Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("Pbase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Pbase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("Pbase")
HTML Ensembl and UCSC mapping
HTML mapping
HTML Pbase-data
PDF Reference Manual
Text NEWS

Details

biocViews DataImport, DataRepresentation, Infrastructure, MassSpectrometry, Proteomics, Software, Visualization
Version 0.10.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL-3
Depends R (>= 2.10), methods, BiocGenerics, Rcpp, Gviz
Imports cleaver(>= 1.3.6), Biobase, Biostrings, IRanges, S4Vectors, mzID, mzR(>= 1.99.1), MSnbase(>= 1.15.5), Pviz, biomaRt, GenomicRanges, rtracklayer
LinkingTo
Suggests testthat (>= 0.8), ggplot2, BSgenome.Hsapiens.NCBI.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene, AnnotationHub, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL https://github.com/ComputationalProteomicsUnit/Pbase
BugReports https://github.com/ComputationalProteomicsUnit/Pbase/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Pbase_0.10.0.tar.gz
Windows Binary Pbase_0.10.0.zip
Mac OS X 10.6 (Snow Leopard) Pbase_0.10.0.tgz
Mac OS X 10.9 (Mavericks) Pbase_0.10.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Pbase/tree/release-3.2
Package Short Url http://bioconductor.org/packages/Pbase/
Package Downloads Report Download Stats

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