To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("traseR")

In most cases, you don't need to download the package archive at all.

traseR

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see traseR.

GWAS trait-associated SNP enrichment analyses in genomic intervals

Bioconductor version: 3.2

traseR performs GWAS trait-associated SNP enrichment analyses in genomic intervals using different hypothesis testing approaches, also provides various functionalities to explore and visualize the results.

Author: Li Chen, Zhaohui S.Qin

Maintainer: li chen<li.chen at emory.edu>

Citation (from within R, enter citation("traseR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("traseR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("traseR")
PDF Perform GWAS trait-associated SNP enrichment analyses in genomic intervals
PDF Reference Manual

Details

biocViews Alignment, Coverage, DataImport, Genetics, QualityControl, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 3.2 (R-3.2) (0.5 years)
License GPL
Depends R (>= 3.2.0), GenomicRanges, IRanges, BSgenome.Hsapiens.UCSC.hg19
Imports
LinkingTo
Suggests BiocStyle, RUnit, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source traseR_1.0.0.tar.gz
Windows Binary traseR_1.0.0.zip
Mac OS X 10.6 (Snow Leopard) traseR_1.0.0.tgz
Mac OS X 10.9 (Mavericks) traseR_1.0.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/traseR/tree/release-3.2
Package Short Url http://bioconductor.org/packages/traseR/
Package Downloads Report Download Stats

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