To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gQTLBase")

In most cases, you don't need to download the package archive at all.

gQTLBase

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see gQTLBase.

gQTLBase: infrastructure for eQTL, mQTL and similar studies

Bioconductor version: 3.2

Infrastructure for eQTL, mQTL and similar studies.

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("gQTLBase")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("gQTLBase")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("gQTLBase")
HTML gQTLBase infrastructure for eQTL archives
PDF Reference Manual

Details

biocViews Software
Version 1.2.1
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License Artistic-2.0
Depends
Imports GenomicRanges, methods, BatchJobs, BBmisc, S4Vectors, BiocGenerics, foreach, doParallel, bit, ff, rtracklayer, ffbase, GenomicFiles
LinkingTo
Suggests geuvStore, knitr, rmarkdown, BiocStyle, RUnit, GGtools, Homo.sapiens, IRanges, erma, GenomeInfoDb, gwascat, geuvPack
SystemRequirements
Enhances
URL
Depends On Me
Imports Me geuvStore, gQTLstats
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source gQTLBase_1.2.1.tar.gz
Windows Binary gQTLBase_1.2.1.zip
Mac OS X 10.6 (Snow Leopard) gQTLBase_1.2.0.tgz
Mac OS X 10.9 (Mavericks) gQTLBase_1.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/gQTLBase/tree/release-3.2
Package Short Url http://bioconductor.org/packages/gQTLBase/
Package Downloads Report Download Stats

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