To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mQTL.NMR")

In most cases, you don't need to download the package archive at all.

mQTL.NMR

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see mQTL.NMR.

Metabolomic Quantitative Trait Locus Mapping for 1H NMR data

Bioconductor version: 3.2

mQTL.NMR provides a complete mQTL analysis pipeline for 1H NMR data. Distinctive features include normalisation using most-used approaches, peak alignment using RSPA approach, dimensionality reduction using SRV and binning approaches, and mQTL analysis for animal and human cohorts.

Author: Lyamine Hedjazi and Jean-Baptiste Cazier

Maintainer: Lyamine Hedjazi <mqtl at ican-institute.org>

Citation (from within R, enter citation("mQTL.NMR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("mQTL.NMR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mQTL.NMR")
PDF Frequently Asked Questions
PDF How to use the mQTL.NMR package
PDF Reference Manual

Details

Version 1.4.0
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends R (>= 2.15.0)
Imports qtl, GenABEL, MASS, outliers, graphics, stats, utils
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Suggests BiocStyle
SystemRequirements
Enhances
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source mQTL.NMR_1.4.0.tar.gz
Windows Binary mQTL.NMR_1.4.0.zip
Mac OS X 10.6 (Snow Leopard) mQTL.NMR_1.4.0.tgz
Package Downloads Report Download Stats

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