To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")

In most cases, you don't need to download the package archive at all.

qcmetrics

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see qcmetrics.

A Framework for Quality Control

Bioconductor version: 3.2

The package provides a framework for generic quality control of data. It permits to create, manage and visualise individual or sets of quality control metrics and generate quality control reports in various formats.

Author: Laurent Gatto

Maintainer: Laurent Gatto <lg390 at cam.ac.uk>

Citation (from within R, enter citation("qcmetrics")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("qcmetrics")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("qcmetrics")
PDF The 'qcmetrics' infrastructure for quality control and reporting
PDF Reference Manual
Text NEWS

Details

biocViews Bioinformatics, MassSpectrometry, Microarray, Proteomics, QualityControl, ReportWriting, Software, Visualisation
Version 1.8.0
In Bioconductor since BioC 2.13 (R-3.0) (2.5 years)
License GPL-2
Depends R (>= 2.10)
Imports Biobase, methods, knitr, tools, Nozzle.R1, xtable, pander, S4Vectors
LinkingTo
Suggests affy, MSnbase, ggplot2, lattice, yaqcaffy, MAQCsubsetAFX, RforProteomics, AnnotationDbi, mzR, hgu133plus2cdf, BiocStyle
SystemRequirements
Enhances
URL https://github.com/lgatto/qcmetrics
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source qcmetrics_1.8.0.tar.gz
Windows Binary qcmetrics_1.8.0.zip
Mac OS X 10.6 (Snow Leopard) qcmetrics_1.8.0.tgz
Mac OS X 10.9 (Mavericks) qcmetrics_1.8.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/qcmetrics/tree/release-3.2
Package Short Url http://bioconductor.org/packages/qcmetrics/
Package Downloads Report Download Stats

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