To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rhtslib")

In most cases, you don't need to download the package archive at all.

Rhtslib

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see Rhtslib.

HTSlib high-throughput sequencing library as an R package

Bioconductor version: 3.2

This package provides version 1.1 of the 'HTSlib' C library for high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib. Motivation and instructions for use of this package are in the vignette, vignette(package="Rhtslib", "Rhtslib").

Author: Nathaniel Hayden [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Rhtslib")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rhtslib")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("Rhtslib")
HTML Motivation and Use of Rhtslib
PDF Reference Manual

Details

biocViews DataImport, Sequencing, Software
Version 1.2.1
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License LGPL (>= 2)
Depends
Imports zlibbioc
LinkingTo zlibbioc
Suggests BiocStyle, knitr
SystemRequirements
Enhances
URL https://github.com/nhayden/Rhtslib http://www.htslib.org/
BugReports https://github.com/nhayden/Rhtslib
Depends On Me deepSNV
Imports Me deepSNV
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Rhtslib_1.2.1.tar.gz
Windows Binary Rhtslib_1.2.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Rhtslib_1.2.1.tgz
Mac OS X 10.9 (Mavericks) Rhtslib_1.2.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Rhtslib/tree/release-3.2
Package Short Url http://bioconductor.org/packages/Rhtslib/
Package Downloads Report Download Stats

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