To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneOverlap")

In most cases, you don't need to download the package archive at all.

GeneOverlap

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see GeneOverlap.

Test and visualize gene overlaps

Bioconductor version: 3.2

Test two sets of gene lists and visualize the results.

Author: Li Shen, Mount Sinai <shenli.sam at gmail.com>

Maintainer: Li Shen, Mount Sinai <shenli.sam at gmail.com>

Citation (from within R, enter citation("GeneOverlap")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GeneOverlap")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("GeneOverlap")
PDF Testing and visualizing gene overlaps with the "GeneOverlap" package
PDF Reference Manual

Details

biocViews MultipleComparison, Software, Visualization
Version 1.6.0
In Bioconductor since BioC 2.14 (R-3.1) (2 years)
License GPL-3
Depends
Imports stats, RColorBrewer, gplots, methods
LinkingTo
Suggests RUnit, BiocGenerics, BiocStyle
SystemRequirements
Enhances
URL http://shenlab-sinai.github.io/shenlab-sinai/
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GeneOverlap_1.6.0.tar.gz
Windows Binary GeneOverlap_1.6.0.zip
Mac OS X 10.6 (Snow Leopard) GeneOverlap_1.6.0.tgz
Mac OS X 10.9 (Mavericks) GeneOverlap_1.6.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GeneOverlap/tree/release-3.2
Package Short Url http://bioconductor.org/packages/GeneOverlap/
Package Downloads Report Download Stats

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