To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("variancePartition")

In most cases, you don't need to download the package archive at all.

variancePartition

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see variancePartition.

Quantifying and interpreting drivers of variation in complex gene expression studies

Bioconductor version: 3.2

Quantify and interpret multiple sources of biological and technical variation in gene expression experiments. Uses linear mixed model to quantify variation in gene expression attributable to individual, tissue, time point, or technical variables.

Author: Gabriel E. Hoffman

Maintainer: Gabriel E. Hoffman <gabriel.hoffman at mssm.edu>

Citation (from within R, enter citation("variancePartition")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("variancePartition")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("variancePartition")
PDF variancePartition
PDF Reference Manual
Text NEWS

Details

biocViews GeneExpression, RNASeq, Regression, Software
Version 1.0.7
In Bioconductor since BioC 3.2 (R-3.2) (0.5 years)
License GPL (>= 2)
Depends ggplot2, foreach, Biobase, methods
Imports lme4, iterators, reshape2, doParallel, limma, dendextend
LinkingTo
Suggests edgeR, knitr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source variancePartition_1.0.7.tar.gz
Windows Binary variancePartition_1.0.7.zip
Mac OS X 10.6 (Snow Leopard) variancePartition_1.0.0.tgz
Mac OS X 10.9 (Mavericks) variancePartition_1.0.7.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/variancePartition/tree/release-3.2
Package Short Url http://bioconductor.org/packages/variancePartition/
Package Downloads Report Download Stats

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