dendextend: Extending 'dendrogram' Functionality in R
Offers a set of functions for extending
'dendrogram' objects in R, letting you visualize and compare trees of
'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters
- the color, size, type, etc of its branches, nodes and labels. (2)
Visually and statistically compare different 'dendrograms' to one another.
Version:
1.19.1
Depends:
R (≥ 3.0.0)
Suggests:
knitr,
rmarkdown,
testthat,
seriation,
colorspace,
ape,
microbenchmark,
gplots,
heatmaply,
dynamicTreeCut,
pvclust,
corrplot,
DendSer,
MASS,
cluster,
fpc,
circlize (≥ 0.2.5),
covr
Published:
2025年07月15日
Author:
Tal Galili [aut, cre, cph] (https://www.r-statistics.com),
Yoav Benjamini [ths],
Gavin Simpson [ctb],
Gregory Jefferis [aut, ctb] (imported code from his dendroextras
package),
Marco Gallotta [ctb] (a.k.a: marcog),
Johan Renaudie [ctb] (https://github.com/plannapus),
The R Core Team [ctb] (Thanks for the Infastructure, and code in the
examples),
Kurt Hornik [ctb],
Uwe Ligges [ctb],
Andrej-Nikolai Spiess [ctb],
Steve Horvath [ctb],
Peter Langfelder [ctb],
skullkey [ctb],
Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram),
Andrie de Vries [ctb] (ggdendro author),
Zuguang Gu [ctb] (circlize author),
Cath [ctb] (https://github.com/CathG),
John Ma [ctb] (https://github.com/JohnMCMa),
Krzysiek G [ctb] (https://github.com/storaged),
Manuela Hummel [ctb] (https://github.com/hummelma),
Chase Clark [ctb] (https://github.com/chasemc),
Lucas Graybuck [ctb] (https://github.com/hypercompetent),
jdetribol [ctb] (https://github.com/jdetribol),
Ben Ho [ctb] (https://github.com/SplitInf),
Samuel Perreault [ctb] (https://github.com/samperochkin),
Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/),
David Bradley [ctb] (https://github.com/DBradley27),
Houyun Huang [ctb] (https://github.com/houyunhuang),
Patrick Schupp [ctb] (https://github.com/pschupp),
Alec Buetow [ctb] (https://github.com/alecbuetow)
Maintainer:
Tal Galili <tal.galili at gmail.com>
NeedsCompilation:
no
Documentation:
Downloads:
Reverse dependencies:
Reverse imports:
adjclust,
archeofrag.gui,
BiBitR,
CALANGO,
celda,
CellTrails,
ChAMP,
CHETAH,
CINNA,
Cluster.OBeu,
conos,
consensusDE,
COTAN,
DEGreport,
didec,
ecan,
EGAnet,
elaborator,
evaluomeR,
factoextra,
funMoDisco,
GAPR,
GeneNMF,
GeneTonic,
ggcorrheatmap,
GlobalAncova,
GOpro,
GSEAmining,
HCD,
heatmaply,
hfr,
HGC,
ILoReg,
INFOSET,
InterCellar,
kanjistat,
ldaPrototype,
mappoly,
Mercator,
metaprotr,
mFD,
multiClust,
numbat,
omXplore,
onemap,
pandemonium,
PhosR,
pRoloc,
rainette,
rnmamod,
rSAFE,
SemanticDistance,
SISIR,
SlideCNA,
SVAlignR,
tidyHeatmap,
tsibbletalk,
ViSEAGO,
visxhclust,
Xplortext,
YAPSA
Reverse suggests:
aqp,
BasketballAnalyzeR,
celltrackR,
circlize,
circlizePlus,
cola,
ComplexHeatmap,
DAPAR,
DatabionicSwarm,
dbscan,
FCPS,
gplots,
HMP16SData,
IncDTW,
isocat,
kmer,
looking4clusters,
mdendro,
moRphomenses,
packFinder,
phylogram,
plotly,
ProjectionBasedClustering,
protti,
rare,
sarp.snowprofile.alignment,
scGPS,
segregation,
seriation,
sharpshootR,
sits,
spiralize,
TreeAndLeaf,
variancePartition,
VecDep
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=dendextend
to link to this page.