To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBASED")
In most cases, you don't need to download the package archive at all.
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see MBASED.
Bioconductor version: 3.2
The package implements MBASED algorithm for detecting allele-specific gene expression from RNA count data, where allele counts at individual loci (SNVs) are integrated into a gene-specific measure of ASE, and utilizes simulations to appropriately assess the statistical significance of observed ASE.
Author: Oleg Mayba, Houston Gilbert
Maintainer: Oleg Mayba <mayba.oleg at gene.com>
Citation (from within R,
enter citation("MBASED")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MBASED")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MBASED")
Follow Installation instructions to use this package in your R session.
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