To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("myvariant")

In most cases, you don't need to download the package archive at all.

myvariant

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see myvariant.

Accesses MyVariant.info variant query and annotation services

Bioconductor version: 3.2

MyVariant.info is a comprehensive aggregation of variant annotation resources. myvariant is a wrapper for querying MyVariant.info services

Author: Adam Mark

Maintainer: Adam Mark, Chunlei Wu <cwu at scripps.edu>

Citation (from within R, enter citation("myvariant")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("myvariant")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("myvariant")
PDF Using MyVariant.R
PDF Reference Manual

Details

biocViews Annotation, GenomicVariation, Software, VariantAnnotation
Version 1.0.1
In Bioconductor since BioC 3.2 (R-3.2) (0.5 years)
License Artistic-2.0
Depends R (>= 3.2.1), VariantAnnotation
Imports httr, jsonlite, S4Vectors, Hmisc, plyr, magrittr, GenomeInfoDb
LinkingTo
Suggests BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source myvariant_1.0.1.tar.gz
Windows Binary myvariant_1.0.1.zip
Mac OS X 10.6 (Snow Leopard) myvariant_1.0.1.tgz
Mac OS X 10.9 (Mavericks) myvariant_1.0.1.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/myvariant/tree/release-3.2
Package Short Url http://bioconductor.org/packages/myvariant/
Package Downloads Report Download Stats

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