To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rqc")

In most cases, you don't need to download the package archive at all.

Rqc

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see Rqc.

Quality Control Tool for High-Throughput Sequencing Data

Bioconductor version: 3.2

Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.

Author: Welliton Souza, Benilton Carvalho <benilton at unicamp.br>

Maintainer: Welliton Souza <well309 at gmail.com>

Citation (from within R, enter citation("Rqc")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Rqc")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("Rqc")
HTML Rqc - Quality Control Tool for High-Throughput Sequencing Data
PDF Reference Manual
Text NEWS

Details

biocViews DataImport, QualityControl, Sequencing, Software
Version 1.4.2
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License GPL (>= 2)
Depends BiocParallel, ShortRead, ggplot2
Imports BiocGenerics, Biostrings, IRanges, methods, S4Vectors, knitr (>= 1.7), BiocStyle, plyr, markdown, grid, reshape2, digest, Rcpp (>= 0.11.6), biovizBase, shiny, Rsamtools, GenomicAlignments, GenomicFiles
LinkingTo Rcpp
Suggests testthat
SystemRequirements
Enhances
URL https://github.com/labbcb/Rqc
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source Rqc_1.4.2.tar.gz
Windows Binary Rqc_1.4.2.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) Rqc_1.4.0.tgz
Mac OS X 10.9 (Mavericks) Rqc_1.4.2.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/Rqc/tree/release-3.2
Package Short Url http://bioconductor.org/packages/Rqc/
Package Downloads Report Download Stats

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