To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicTuples")

In most cases, you don't need to download the package archive at all.

GenomicTuples

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see GenomicTuples.

Representation and Manipulation of Genomic Tuples

Bioconductor version: 3.2

GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

Author: Peter Hickey <peter.hickey at gmail.com>, with contributions from Marcin Cieslik and Herve Pages.

Maintainer: Peter Hickey <peter.hickey at gmail.com>

Citation (from within R, enter citation("GenomicTuples")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GenomicTuples")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("GenomicTuples")
HTML GenomicTuples: Classes and Methods
PDF Reference Manual
Text NEWS

Details

biocViews DataRepresentation, Infrastructure, Sequencing, Software
Version 1.4.5
In Bioconductor since BioC 3.0 (R-3.1) (1.5 years)
License Artistic-2.0
Depends R (>= 3.2.0), GenomicRanges(>= 1.19.47), GenomeInfoDb, BiocGenerics, methods
Imports Rcpp (>= 0.11.2), S4Vectors, Biobase, IRanges, data.table
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL www.github.com/PeteHaitch/GenomicTuples
BugReports https://github.com/PeteHaitch/GenomicTuples/issues
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source GenomicTuples_1.4.5.tar.gz
Windows Binary GenomicTuples_1.4.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) GenomicTuples_1.4.0.tgz
Mac OS X 10.9 (Mavericks) GenomicTuples_1.4.5.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/GenomicTuples/tree/release-3.2
Package Short Url http://bioconductor.org/packages/GenomicTuples/
Package Downloads Report Download Stats

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