To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("specL")
In most cases, you don't need to download the package archive at all.
This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see specL.
Bioconductor version: 3.2
specL provides a function for generating spectra libraries which can be used for MRM SRM MS workflows in proteomics. The package provides a BiblioSpec reader, a function which can add the protein information using a FASTA formatted amino acid file, and an export method for using the created library in the Spectronaut software.
Author: Christian Trachsel <christian.trachsel at fgcz.uzh.ch>, Christian Panse <cp at fgcz.ethz.ch>, Jonas Grossmann <jg at fgcz.ethz.ch>, Witold E. Wolski <wewolski at gmail.com>
Maintainer: Christian Panse <cp at fgcz.ethz.ch>, Witold E. Wolski <wewolski at gmail.com>
Citation (from within R,
enter citation("specL")):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("specL")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("specL")
Follow Installation instructions to use this package in your R session.
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