To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAprobR")

In most cases, you don't need to download the package archive at all.

RNAprobR

This package is for version 3.2 of Bioconductor; for the stable, up-to-date release version, see RNAprobR.

An R package for analysis of massive parallel sequencing based RNA structure probing data

Bioconductor version: 3.2

This package facilitates analysis of Next Generation Sequencing data for which positional information with a single nucleotide resolution is a key. It allows for applying different types of relevant normalizations, data visualization and export in a table or UCSC compatible bedgraph file.

Author: Lukasz Jan Kielpinski [aut], Nikos Sidiropoulos [cre, aut], Jeppe Vinther [aut]

Maintainer: Nikos Sidiropoulos <nikos.sidiro at gmail.com>

Citation (from within R, enter citation("RNAprobR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAprobR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("RNAprobR")
PDF RNAprobR: An R package for analysis of the massive parallel sequencing based methods of RNA structure probing
PDF Reference Manual
Text NEWS

Details

biocViews Coverage, GenomeAnnotation, Normalization, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 3.1 (R-3.2) (1 year)
License GPL (>=2)
Depends R (>= 3.1.1), GenomicFeatures(>= 1.16.3), plyr (>= 1.8.1), BiocGenerics(>= 0.10.0)
Imports Biostrings(>= 2.32.1), GenomicRanges(>= 1.16.4), Rsamtools(>= 1.16.1), rtracklayer(>= 1.24.2), GenomicAlignments(>= 1.5.12)
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source RNAprobR_1.2.0.tar.gz
Windows Binary RNAprobR_1.2.0.zip
Mac OS X 10.6 (Snow Leopard) RNAprobR_1.2.0.tgz
Mac OS X 10.9 (Mavericks) RNAprobR_1.2.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/RNAprobR/tree/release-3.2
Package Short Url http://bioconductor.org/packages/RNAprobR/
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