Pairwise Align Protein

Sequence Manipulation Suite:

Pairwise Align Protein

Pairwise Align Protein accepts two protein sequences and determines the optimal global alignment. Use Pairwise Align Protein to look for conserved sequence regions.

Paste sequence one (in raw sequence or FASTA format) into the text area below. Input limit is 20,000 characters.
>Human p53 SSSVPSQKTYQGSYGFRLGFLHSGTAKSVTCTYSPALNKMFCQLAKTCPV QLWVDSTPPPGTRVRAMAIYKQSQHMTEVVRRCPHHERCSDSDGLAPPQH LIRVEGNLRVEYLDDRNTFRHSVVVPYEPPEVGSDCTTIHYNYMCNSSCM GGMNRRPILTIITLEDSSGNLLGRNSFEVRVCACPGRDRRTEEENL
Paste sequence two (in raw sequence or FASTA format) into the text area below. Input limit is 20,000 characters.
>Xenopus p53 SCAVPSTDDYAGKYGLQLDFQQNGTAKSVTCTYSPELNKLFCQLAKTCPL LVRVESPPPRGSILRATAVYKKSEHVAEVVKRCPHHERSVEPGEDAAPPS HLMRVEGNLQAYYMEDVNSGRHSVCVPYEGPQVGTECTTVLYNYMCNSSC MGGMNRRPILTIITLETPQGLLLGRRCFEVRVCACPGRDRRTEEDNY

Use the following parameters to specify how alignments are scored.

• Scoring matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45
• Value for gaps preceding a sequence 6 5 4 3 2 1 0 -1 -2 -3 -4 -5 -6
• Value for internal gaps 6 5 4 3 2 1 0 -1 -2 -3 -4 -5 -6
• Value for gaps following a sequence 6 5 4 3 2 1 0 -1 -2 -3 -4 -5 -6

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Sun 1 Oct 12:00:07 2023

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