GenBank to FASTA

Sequence Manipulation Suite:

GenBank to FASTA

GenBank to FASTA accepts a GenBank file as input and returns the entire DNA sequence in FASTA format. Use this program when you wish to quickly remove all of the non-DNA sequence information from a GenBank file.

Paste the contents of one or more GenBank files into the text area below. Input limit is 200,000,000 characters.
LOCUS SUSFASCIN 2320 bp mRNA INV 14-MAR-2000 DEFINITION Strongylocentrotus purpuratus fascin (FSCN1) mRNA, complete cds. ACCESSION L12047 VERSION L12047.1 GI:161470 KEYWORDS actin bundling protein; fascin. SOURCE Strongylocentrotus purpuratus. ORGANISM Strongylocentrotus purpuratus Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus. REFERENCE 1 (bases 1 to 2320) AUTHORS Kane,R.E. TITLE Actin polymerization and interaction with other proteins in temperature-induced gelation of sea urchin egg extracts JOURNAL J. Cell Biol. 71 (3), 704-714 (1976) MEDLINE 77051438 REFERENCE 2 (bases 1 to 2320) AUTHORS Bryan,J. and Kane,R.E. TITLE Separation and interaction of the major components of sea urchin actin gel JOURNAL J. Mol. Biol. 125 (2), 207-224 (1978) MEDLINE 79091184 REFERENCE 3 (bases 1 to 2320) AUTHORS Bryan,J., Edwards,R., Matsudaira,P., Otto,J. and Wulfkuhle,J. TITLE Fascin, an echinoid actin-bundling protein, is a homolog of the Drosophila singed gene product JOURNAL Proc. Natl. Acad. Sci. U.S.A. 90 (19), 9115-9119 (1993) MEDLINE 94022326 FEATURES Location/Qualifiers source 1..2320 /organism="Strongylocentrotus purpuratus" /db_xref="taxon:7668" /dev_stage="larva" gene 1..2320 /gene="FSCN1" CDS 85..1575 /gene="FSCN1" /function="actin bundling protein" /note="putative" /codon_start=1 /product="fascin" /protein_id="AAC37183.1" /db_xref="GI:161471" /translation="MPAMNLKYKFGLVNSAGRYLTAEKFGGKVNASGATLKARQVWIL EQEESSTISYLKAPSGNFLSADKNGNVYCSVEDRTEDADTGFEIELQPDGKWALKNVS HQRYLACNGEELICSESSTSNPSANWTVQLAIHPQVCMKNVQHQRYAHLKTSEEGEDS VVVDELVPWGADSTLTLVYLGKGKYGLEAFNGKFVQTDGQLAGTANEQTQFTLIFTSG HLVLRDNNGRHLGVDSGTRVLKSSKPGLTKANYFILEDSCPQGAFEFGGKYASLKQGE DVSFKLLVDEDIEDTETFQLEFVETDKYAIRVCDPKKNSRDAKFWKTVAAGIQANGNS KDQTDCQFSVEYNGNDMHVRAPGGKYVSVRDNGHLFLQDSPKDFIFRLLNRPKLVLKC PHGFVGMKEGKAEVACNRSNFDVFTVTYKEGGYTIQDSCGKYWSCDDSSRIVLGEAAG TFFFEFHELSKFAIRAESNGMLIKGEQSGLFTANGSEVSKDTLWEF" polyA_signal 2155..2160 /gene="FSCN1" ORIGIN 1 acttgaaagt ggataaaatc gactgatacc aaaacaacat tgttttacag aagtggtcgt 61 ttgaggacat caacatattt cacaatgcct gctatgaatt taaaatacaa atttggcctg 121 gtcaactcgg ccggcagata cctcactgct gagaagtttg gtggcaaagt caatgcctca 181 ggagcaacgt taaaagccag gcaagtatgg atcctagagc aagaagagag cagcacgatc 241 agctacttga aggcgccctc tggtaacttc ctctctgcag ataaaaacgg taacgtctat 301 tgcagtgttg aggacaggac ggaggacgcg gatacaggat tcgagatcga gttgcaaccc 361 gatggtaaat gggccctcaa gaatgtttct caccagaggt acctagcttg caatggtgag 421 gagctgatct gcagtgaatc cagcaccagc aacccctcag caaactggac tgtccagctg 481 gccatccatc cacaggtctg catgaagaac gtccagcacc aacgctacgc acatctcaaa 541 accagtgagg agggtgaaga cagcgtggtt gtagacgaat tggttccctg gggagctgat 601 tccacactca ctcttgtcta cctgggcaaa ggaaagtacg gccttgaggc cttcaacgga 661 aagtttgtcc aaaccgacgg acagcttgct ggcacagcca acgaacagac gcagttcaca 721 ctcatcttca catccggtca cctggtacta agggacaaca atggacgtca cttaggagtg 781 gacagtggaa ccagggtctt gaagtcctcc aagcctggac tgacgaaagc caattacttc 841 atcctagagg atagctgtcc acaaggtgcc ttcgaatttg gtggcaaata tgcatcgtta 901 aagcaaggcg aagatgtttc attcaagctt cttgttgacg aagatatcga agacacagag 961 accttccagt tggagttcgt tgaaaccgac aagtatgcca tcagggtatg tgaccccaag 1021 aagaactcca gagatgctaa gttctggaag accgtcgctg ctggtatcca ggctaacggc 1081 aactcaaagg accagacgga ctgtcaattc tctgtcgaat acaacggcaa cgacatgcat 1141 gtgcgtgctc caggaggcaa gtatgttagt gtccgtgaca acggccatct cttccttcag 1201 gattcaccca aagacttcat cttccgtctg ctcaaccgac ccaagctggt gctcaagtgc 1261 cctcatggat tcgtgggcat gaaggagggc aaggctgagg tcgcctgcaa ccgatcaaac 1321 tttgatgtct tcactgtcac ctacaaggaa ggcggataca ctatccaaga ctcctgtggc 1381 aagtactggt cttgtgatga cagtagccgc atcgttcttg gagaggcagc aggtactttc 1441 ttcttcgagt tccatgagct ctccaagttt gctatccgag cagaaagcaa cggcatgttg 1501 atcaagggcg agcagagtgg cttgtttacc gccaatggtt ccgaggtctc aaaggacaca 1561 ctgtgggaat tctaaacaaa ttgggcttga aagaagccaa atccaaatca gaagtagagt 1621 agctgacaag ccagccactc tatctattat atcaattgca aatattgtac atttttttaa 1681 tacaaaaata ttttcaaagg tgcataataa ttatttcata ctctggtggg atctttagga 1741 tcatattttc tcattgcctt ggcatactga cttccattat ccctcatttt ttaaaaggta 1801 aattgatcac ttaatatcaa ctgaaaacga aatggaagta ggtctctgga aatttagaag 1861 aatagatgac tatccagtat attcaaatat ttgttgaacc tgtctcaaaa aaaccccata 1921 aaaaaccctc tgttttgtgc tgtctcatag ccataaatag agatcaattc tggtggtata 1981 tgctacttaa aatcaggctt gaaatagaat aaatggaatg gaatggattt tcaaaaagat 2041 ttggaatttt aaatttgcag ccagtgtccg tgacaactct tgcataccag aagcactaaa 2101 cagtctctgc cgcaccgctc gcccaggtgt attgttgtga ctgtactttt gaacaataaa 2161 acagatcttt tcgtcaagtt tggatataaa agtggattga aatgcacgaa tagattcgac 2221 ttgtataggg catggtggac attgatttta cagatacttt caatataccg gtaaaaatca 2281 atcatataga aaatgaaaac agggtgtaat atctcaaata //

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