EMBL to FASTA

Sequence Manipulation Suite:

EMBL to FASTA

EMBL to FASTA accepts an EMBL file as input and returns the entire DNA sequence in FASTA format. Use this program when you wish to quickly remove all of the non-DNA sequence information from an EMBL file.

Paste the contents of one or more EMBL files into the text area below. Input limit is 200,000,000 characters.
ID AF177870 standard; DNA; INV; 3123 BP. XX AC AF177870; XX SV AF177870.1 XX DT 02-NOV-1999 (Rel. 61, Created) DT 17-AUG-2000 (Rel. 64, Last updated, Version 2) XX DE Caenorhabditis sp. CB5161 putative PP2C protein phosphatase FEM-2 (fem-2) DE gene, complete cds. XX KW . XX OS Caenorhabditis sp. CB5161 OC Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; OC Rhabditidae; Peloderinae; Caenorhabditis. XX RN [1] RP 1-3123 RA Stothard P.M., Hansen D., Pilgrim D.; RT "Isolation of PP2C sequences using degenerate-oligo PCR"; RL Unpublished. XX RN [2] RP 1-3123 RA Stothard P.M., Hansen D., Pilgrim D.; RT ; RL Submitted (17-AUG-1999) to the EMBL/GenBank/DDBJ databases. RL Biological Sciences, University of Alberta, Edmonton, AB T6G-2E9, Canada XX DR SPTREMBL; Q9U6S2; Q9U6S2. XX FH Key Location/Qualifiers FH FT source 1..3123 FT /db_xref="taxon:135651" FT /organism="Caenorhabditis sp. CB5161" FT /strain="CB5161" FT mRNA join(<265..402,673..781,911..1007,1088..1215,1377..1573, FT 1866..2146,2306..2634,2683..>2855) FT /gene="fem-2" FT /product="putative FEM-2 protein phosphatase type 2C" FT CDS join(265..402,673..781,911..1007,1088..1215,1377..1573, FT 1866..2146,2306..2634,2683..2855) FT /codon_start=1 FT /db_xref="SPTREMBL:Q9U6S2" FT /note="possible sex-determining protein" FT /gene="fem-2" FT /product="putative PP2C protein phosphatase FEM-2" FT /protein_id="AAF04557.1" FT /translation="MSDSLNHPSSSTVHADDGFEPPTSPEDNNKKPSLEQIKQEREALF FT TDLFADRRRSARSVIEEAFQNELMSAEPVQPNVPNPHSIPIRFRHQPVAGPAHDVFGDA FT VHSIFQKIMSRGVNADYSHWMSYWIALGIDKKTQMNYHMKPFCKDTYATEGSLEAKQTF FT TDKIRSAVEEIIWKSAEYCDILSEKWTGIHVSADQLKGQRNKQEDRFVAYPNGQYMNRG FT QSDISLLAVFDGHGGHECSQYAAAHFWEAWSDAQHHHSQDMKLDELLEKALETLDERMT FT VRSVRESWKGGTTAVCCAVDLNTNQIAFAWLGDSPGYIMSNLEFRKFTTEHSPSDPEEC FT RRVEEVGGQIFVIGGELRVNGVLNLTRALGDVPGRPMISNKPDTLLKTIEPADYLVLLA FT CDGISDVFNTSDLYNLVQAFVNEYDVEDYHELARYICNQAVSAGSADNVTVVIGFLRPP FT EDVWRVMKTDSDDEESELEEEDDNE" XX SQ Sequence 3123 BP; 986 A; 605 C; 597 G; 935 T; 0 other; gaacgcgaat gcctctctct ctttcgatgg gtatgccaat tgtccacatt cactcgtgtt 60 gcctcctctt tgccaacacg caagacacca gaaacgcgtc aaccaaagag aaaaagacgc 120 cgacaacggg cagcactcgc gagagacaaa ggttatcgcg ttgtgttatt atacattcgc 180 atccgggtca actttagtcc gttgaacatg cttcttgaaa acctagttct cttaaaataa 240 cgttttagaa gttttggtct tcagatgtct gattcgctaa atcatccatc gagttctacg 300 gtgcatgcag atgatggatt cgagccacca acatctccgg aagacaacaa caaaaaaccg 360 tctttagaac aaattaaaca ggaaagagaa gcgttgttta cggttagtta cctattagct 420 gcaagttttg aaaaagcgga atctgtaaaa agcggaatct gtaaaaaaaa catctaagga 480 ataattctga aaagaaaaag tttctaaatg ttaatcggaa tccaattttt atgaaattat 540 ttaaaaaaaa actaaaatta gtttctaaaa aatttttcta aagtaattgg accatgtgaa 600 ggtacaccca cttgttccaa tatgccatat ctaactgtaa aataatttga ttctcatgag 660 aatatttttc aggatctatt cgcagatcgt cgacgaagcg ctcgttctgt gattgaagaa 720 gctttccaaa acgaactcat gagtgctgaa ccagtccagc caaacgtgcc gaatccacat 780 tgtgagttgg aaatttttat ttgataacca agagaaaaaa agttctacct ttttttcaaa 840 aacctttcca aaaatgattc catctgatat aggattaaga aaaatatttt ccgaaatctc 900 tgcttttcag cgattcccat tcgtttccgt catcaaccag ttgctggacc tgctcatgat 960 gttttcggag acgcggtgca ttcaattttt caaaaaataa tgtccaggta tacactattt 1020 ttgcatattt ttcttgccaa atttggtcaa aaaccgtagt acaacccaaa aagtttcttc 1080 atttcagagg agtgaacgcg gattatagtc attggatgtc atattggatc gcgttgggaa 1140 tcgacaaaaa aacacaaatg aactatcata tgaaaccgtt ttgcaaagat acttatgcaa 1200 ctgaaggctc cttaggtagg ttagtctttt ctaggcacag aagagtgaga aaattctaaa 1260 tttctgagca gtctgctttt tgttttcctt gagtttttac ttaaagctct taaaagaaat 1320 ctaggcgtga agttcgagcc ttgtaccata ccacaacagc attccaaatg ttacagaagc 1380 gaaacaaaca tttactgata aaatcaggtc agctgttgag gaaattatct ggaagtccgc 1440 tgaatattgt gatattctta gcgagaagtg gacaggaatt catgtgtcgg ccgaccaact 1500 gaaaggtcaa agaaataagc aagaagatcg ttttgtggct tatccaaatg gacaatacat 1560 gaatcgtgga caggttagtg cgaatcgggg actcaagatt tactgaaata gtgaagagaa 1620 aacaaaagaa aactatattt tcaaaaaaaa tgagaactct aataaacaga atgaaaaaca 1680 ttcaaagcta cagtagtatt tccagctgga gtttccagag ccaaaaaaat gcgagtatta 1740 ctgtagtttt gaaattggtt tctcacttta cgtacgattt tttgattttt ttttcagact 1800 cttcatatga aaaaaaatca tgttttctcc tttacaagat ttttttgatc tcaaaacatt 1860 tccagagtga catttcactt cttgcggtgt tcgatgggca tggcggacac gagtgctctc 1920 aatatgcagc tgctcatttc tgggaagcat ggtccgatgc tcaacatcat cattcacaag 1980 atatgaaact tgacgaactc ctagaaaagg ctctagaaac attggacgaa agaatgacag 2040 tcagaagtgt tcgagaatct tggaaaggtg gaaccactgc tgtctgctgt gctgttgatt 2100 tgaacactaa tcaaatcgca tttgcctggc ttggagattc accagggtaa tcaatttttt 2160 tttagttttt ggaactttac gtcccgaaaa attattcctt tatcacctaa ttcctacagt 2220 aacccaagct ccgaattaaa taaagttaaa gcgtggtata cacataaaaa taagaaaaaa 2280 ttgttcatga aatccatttt tccagttaca tcatgtcaaa cttggagttc cgcaaattca 2340 ctactgaaca ctccccgtct gacccggagg aatgtcgacg agtcgaagaa gtcggtggcc 2400 agatttttgt gatcggtggt gagctccgtg tgaatggagt actcaacctg acgcgagcac 2460 taggagacgt acctggaaga ccaatgatat ccaacaaacc tgatacctta ctgaagacga 2520 tcgaacctgc ggattatctt gttttgttgg cctgtgacgg gatttctgac gtcttcaaca 2580 ctagtgattt gtacaatttg gttcaggctt ttgtcaatga atatgacgta gaaggtatca 2640 aactgatcgt ttttcacatc acaaaattct tgaattttcc agattatcac gaacttgcac 2700 gctacatttg caatcaagca gtttcagctg gaagtgctga caatgtgaca gtagttatag 2760 gtttcctccg tccaccagaa gacgtttggc gtgtaatgaa aacagactcg gatgatgaag 2820 agagcgagct cgaggaagaa gatgacaatg aatagtttat tgcaagtttt ccaaaacttt 2880 tccaatttcc ctgggtattg attagcatcc atatcttacg gcgattatat caattgtaac 2940 attatttctg tttctccccc cacctctcaa attttcaaat gacccttttt cttttcgtct 3000 acctgtatcg ttttccattc atctcccccc ctccactgtg gtatatcatt ttgtcattag 3060 aaagtattat tttgattttc attggcagta gaagacaaca ggatacagaa gaggttttca 3120 cag 3123 //

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