| Accession: | |
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| Functional site class: | Caspase cleavage motif |
| Functional site description: | The proteases caspases-3 and -7 play an important role in programmed cell death (apoptosis). Cleavage of the caspase substrates results in characteristic morphological features of apoptotic cell death, including membrane blebbing, pyknotic nuclei, cell rounding, and formation of apoptotic vesicles. Caspases recognise their substrates by a cleavage motif. The amino acids of the substrate around the caspase cleavage site are named N- to C-terminal: P4, P3, P2, P1, P-1. The scissile bond between the essential aspartate at P1 and P-1, usually a small amino acid, is cleaved by caspase-3 and -7, whereas positions P4 to P-1 are important for substrate specificity and recognition. |
| ELM Description: | The amino acids around the caspase-3 and -7 cleavage site are named N- to C-terminal: P4, P3, P3, P2, P1, P-1. The scissile bond between P1 and P-1 is cleaved by caspase-3 and -7, whereas positions P4 to P-1 are important for substrate specificity and recognition. P1 is always an aspartate (D), while P-1 is usually a small amino acid. Proline (P) as secondary alpha-amino acid is not accepted at P-1. An in vitro kinetic study argues for small amino acids, phenylalanine (F) or tyrosine and no ionic amino acids at P-1 (Stennicke,2000). The regular expression allows small amino acids at P-1. Other residues are still described but data was not valid enough to create an additional regular expression. The backbone of amino acids at P2 and P3 is stabilised by hydrogen (H) bonds allowing caspase-3 and -7 a broad spectrum of amino acids at these positions. At P2 non-polar amino acids (valine (V), leucine (L), P) are preferred because of possible interactions with a hydrophobic pocket. Threonine (T) is also very common. At P3 glutamate (E) is preferred because of an additional H-bond. However other amino acids like serine (S) or L are still common. In the regular expression P3 is not specified, except for the prohibition of P, because caspase-3 and -7 accept a variety of amino acids at P3. D is strongly preferred at P4 due to strong H-bond interactions, followed by S, T, and E. Crystal structures with pentapeptides argue for a preference for hydrophobic residues at P5 because of hydrophobic interactions with two F residues in case of caspase-3. This site is missing in caspase-7 (Fu,2008). The regular expression does not include P5 because caspase-3 cleaves also substrates with non-hydrophobic residues at P5. Nevertheless a hydrophobic residue at P5 is a hint that the protein is rather a caspase-3 substrate then a caspase-7 one. Based on the observed variations at P4-P2, the regular expression will on the one hand produce false positives and on the other hand not match all described cleavage sites. |
| Pattern: | [DSTE][^P][^DEWHFYC]D[GSAN] |
| Pattern Probability: | 0.0030937 |
| Present in taxon: | Metazoa |
| Interaction Domain: |
Peptidase_C14 (PF00656)
Caspase domain
(Stochiometry: 1 : 1)
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