ELM
The Eukaryotic Linear Motif resource for
Functional Sites in Proteins

LIG_PTAP_UEV_1

Accession:
Functional site class:
UEV Domain binding PTAP motif
Functional site description:
The PTAP motif mediates binding of several cellular and viral proteins to the UEV domain of the class E vacuolar sorting protein Tsg101. Like several other linear motifs, including the CtBP binding motif in adenovirus and USP7 binding motif in EBV, PTAP was first discovered in a viral protein. Gottlinger,1991 observed that disruption of the p6 region of HIV gag caused defective virus budding and further investigation pinpointed 4 residues, PTAP, vital to viral egress. The UEV domain of Tsg101 was not identified as the binding partner until ten years later. The solved structure of HIV gag-p6 PTAP motif bound to the UEV domain of Tsg101 showed that the motif formed one turn of a left-handed type II polyproline helix, similar to the ligands of WW and SH3 domains, while the flanking regions form extended conformations. The analysis showed that there are extensive interactions between the defined residues of the motif and the binding site, an observation consistent with the strict motif definition.
ELM Description:
The motif has an unusually strict definition, being fixed in all positions with the exception of the second position allowing a threonine or a serine. A randomized nonapeptide library was used for phage display and screened against the UEV domain returning 29 peptides of the consensus [AP][ST]AP allowing a non-canonical alanine at the first position. However no substitutions were tolerated in the AP region in a peptide that conferred binding. Peptide substitution analysis of the gag-p6 peptide PEPTAPPEE, confirmed that alanine was tolerated, however, proline was strongly preferred (Schlundt,2009). Nevertheless, no functional instances are known to utilize this sub-optimal variant. The UEV domain-bound motif forms one turn of a left-handed type II polyproline helix while the flanking regions form extended conformations. There are extensive intramolecular interactions between the defined residues of the motif. This observation may explain the strict motif definition. The most commonly seen variant of the peptide contains additional C-terminal prolines that have been suggested to increase affinity by stabilising the left-handed type II polyproline helix. A 9 residue peptide from the p6 chain of gag, PEPTAPPEE binds with the same affinity as full length p6, suggesting that at most the immediately flanking residues are necessary for Tsg101 binding of gag (Pornillos,2002). From the limited data available, viral proteins seem to have evolved a stronger binding affinity than host proteins. In an analysis of the TomL1 protein, HIV gag was shown to competitively out bind the UEV binding motif of TomL1 (Yanagida-Ishizaki,2008). The gag-p6 motif binds with an affinity (Kd) of 27 micromolar, however no host motifs tested (Vps37b: 55 micromolar; SCAMP3: 1975 micromolar; Tal-PSAP: 62 micromolar; and PTAP: 344 micromolar) bound with similar strength.
Pattern: .P[TS]AP.
Pattern Probability: 0.0001081
Present in taxons: Homo sapiens Metazoa
Interaction Domain:
UEV (PF05743) UEV domain (Stochiometry: 1 : 1)
PDB Structure: 1M4P
o See 28 Instances for LIG_PTAP_UEV_1
The creation of multivesicular bodies (MVBs) is dependent on class E vacuolar protein sorting (VPS) proteins, the majority of which are part of four ESCRT (Endosomal Sorting Complexes Required for Transport) complexes (Raiborg,2009; Williams,2007). These complexes are sequentially recruited to the membranes of endosomes as cargos are sorted and targeted (although this model has been challenged (Nickerson,2007)). Tsg101 is a component of the ESCRT-1 complex, the second component of the VPS pathway (Previously ESCRT-I was the first ESCRT complex however recently HRS/STAM has been given the name ESCRT-0). Tsg101 recognises ubiquitinated cargoes via an ~145 aa N-terminal UEV domain and recruits the downstream ESCRT complexes. UEV domains are similar to E2 ubiquitin ligases, however, they have lost their ability to transfer ubiquitin due to the lack of a cysteine in the active site necessary to form thioester bonds with ubiquitin.
The UEV domain also contains the PTAP-binding site and studies have shown that both ubiquitin and the PTAP motif can bind a UEV domain simultaneously. It is unknown whether UEV domains in other proteins have the ability to bind PTAP, however, the C-terminal end of Tsg101 UEV domain differs from all other known E2 folds and this difference may allow Tsg101 to specifically bind PTAP-containing peptides (Pornillos,2002). In the highly studied yeast VPS pathway, the UEV domain of the Tsg101 orthologue, Vps23, is not known to bind PTAP, suggesting that this novel E2 fold may have evolved in metazoans although this has not been shown definitively. Tsg101 itself contains a PTAP motif that has been suggested as an auto-inhibitory peptide. Analysis using liquid beta-galactosidase assays showed binding of HRS and Tsg101 increased 3-fold when the Tsg101 PTAP motif was mutated to LTAL. Several cellular proteins are known to interact with Tsg101 through PTAP motifs. However, the majority of these interactions have weak phenotypes and disruption does not abolish binding (often due to secondary interaction mediated by the C-terminal Steadiness box), although affinity is lowered. For example, mutation to the Hrs PTAP motif reduced binding by two-thirds (Lu,2003).
Although several host proteins are known to interact with Tsg101 through a PTAP motif, these interactions are overshadowed by the important role that the motif plays in virus budding. The motif is essential for efficient viral particle egress of numerous enveloped RNA viruses such as the Rhabdoviridae (Vesicular Stomatitis Virus), Filoviridae (Ebola virus) and Retroviridae (HIV) (Several reviews of late domains are available such as Bieniasz,2006 and 16215227). The PTAP motif is the best known of the class of targeting motifs for the ESCRT pathway termed, rather confusingly as "late domains". "Late domains", earning the moniker of "late" due to there importance in the late stages of the viral life cycle (i.e. budding), can consist of several other motifs or groupings of motifs including; the WW domain binding motif PPxY for NEDD4, the AIP1/Alix binding motif YPxL and FPIV, and a motif of unknown binding partner in paramyxoviruses. PTAP-mediated interactions of host proteins with Tsg101 results in a diverse range of functionality. Hrs, a member of the ESCRT-0 (Hrs, STAM), associates with the early endosomes, recognizes ubiquitinated cargos and recruits the downstream ESCRT complexes through interaction with the UEV domain of Tsg101. Tsg101 mediates subsequent trafficking by targeting the cargo to the late endosome or, under certain circumstances, to be recycled to the cell surface. Two distinct regions are involved in the full affinity binding of Hrs to Tsg101; either the mutation of the PTAP motif or deletion of the C-terminal region decreased the interaction 20 fold. Tsg101/Hrs interaction mutants were unable to transport epidermal growth factor receptor (EGFR) from early to late endosome, resulting in accumulation of the EGFR in the early endosome, preventing their degradation (Lu,2003).
Vps37b, a member of the ESCRT-I complex (Tsg101, Vps28, a Vps37 and a Fam125) that target cargos from the early to the late endosome and eventually to the lysosome for degradation, associates with Tsg101 through a bipartite binding interface where a coiled-coil region and a PTAP motif in Vps37b binds to the steadiness box and UEV domain in Tsg101. The dissociation constant of the interaction of the Vps37b PTAP peptide and the UEV domain was calculated as 155 micromolar. However, the PTAP motif is not the primary Tsg101 binding site of Vps37b and mutation of the PTAP binding pocket of the UEV domain did not substantially reduce the interaction between the full-length proteins (Stuchell,2004). Another ESCRT adapter protein, ALIX, can bind the proteins from both ESCRT-I and ESCRT-III and interacts with Tsg101 through a PTAP motif (Carlton,2008).
Tal, a RING finger containing Tsg101-specific E3 ubiquitin ligase, is a regulator of Tsg101 functionality. Tal binds Tsg101 via one of two functional c-terminal proximal PTAP-like motifs and monoubiquitinates Tsg101 at multiple sites, deactivating it and nullifying its ability to sort cargos. Like HRS, Tal binding to Tsg101 is mediated not only by the PTAP motif but also by a second interaction, in this case a coiled-coil region of Tal interacting with the N-terminal steadyness box of Tsg101. Interestingly, the dual PTAP sites of Tal have been shown to bind with differing affinities (Amit,2004). The second PSAP motif bound more strongly of the two with a KD of 62 micromolar compared to 344 micromolar for the preceding PTAP (Schlundt,2009). Mahogunin has been shown to bind Tsg101 through a PTAP-UEV interaction and a second binding site in the region of 317-392 interacting with the steadiness box of Tsg101. Similarly to the binding of Tal to Tsg101, this interaction facilities Mahogunin`s ability to regulate Tsg101 through ubiquitination. The ability of Mahogunin to ubiquitinate Tsg101 in an in vivo ubiquitylation assay was shown to be significantly reduced by mutation of the PTAP motif to ASAA and depletion of the PTAP containing Spongiform Neurodegeneration-associated E3 Ligase Mahogunin by siRNA has been shown to slow the degradation of EGFR by disrupting transport to the Lysosome and consequently prolong the activation of EGFR downstream MAP kinase (Kim,2007). Current theory contends that Tal and Mahogunin are involved in Tsg101 recycling whereby ubiquitylation switches Tsg101 from a membrane-bound active state to an inactive soluble state. This theory would assert that an ubiquitination/de-ubiquitination cycle would disassociate cargos from Tsg101, deactivating it until a deubiquitylating enzyme (DUBs), potentially containing a PTAP-like motif, reactivates it allowing the Tsg101 to bind another cargo (Amit,2004). DUBs for this theory have yet to be identified.
SCAMP3, a negative regulator of EGFR degradation by promoting recycling and redirecting endosomes back to the cell membrane, contains a functional Tsg101 binding PTAP motif (Aoh,2009). Tom1L1 contains two functional Tsg101 binding motifs and has been shown to be recruited to endosomes (Yanagida-Ishizaki,2008). Several of the Connexin family of proteins were shown to interact with Tsg101 and as the carboxyterminal tail of connexin-45 contains a PTAP motif it was suggested that this motif may mediate the interaction, however, further analyses are necessary (Auth,2009). A recent high throughput analysis of potential Tsg101 interactors suggested that polyA-binding protein 1 (PABP1), Sec24b, NF-kappaB2 and eIF4B also interact with Tsg101 through a PTAP-like motif (Schlundt,2009). Currently, no functionality or phenotype has been has been assigned to these interactions. If these interactions are biologically meaningful it would suggest an important role of the PTAP-Tsg101 interaction outside of the VPS pathway.
o 8 selected references:


o 7 GO-Terms:
Biological Process:
Interspecies Interaction Between Organisms (also annotated in these classes: LIG_LYPXL_L_2 LIG_LYPXL_S_1 )
Protein Transport (also annotated in class: )
Ubiquitin-Dependent Protein Breakdown Via The Multivesicular Body Pathway (also annotated in class: )
Non-Lytic Viral Budding (also annotated in these classes: LIG_LYPXL_L_2 LIG_LYPXL_S_1 LIG_LYPXL_SIV_4 )
Cellular Compartment:
Escrt I Complex (also annotated in these classes: LIG_EF_ALG2_ABM_1 LIG_LYPXL_L_2 LIG_LYPXL_S_1 )
Cytosol (also annotated in these classes: CLV_C14_Caspase3-7 CLV_Separin_Fungi CLV_Separin_Metazoa DEG_APCC_DBOX_1 DEG_APCC_KENBOX_2 DEG_APCC_TPR_1 DEG_Cend_DCAF12_1 DEG_Cend_FEM1AC_1 DEG_Cend_FEM1B_2 DEG_Cend_KLHDC2_1 DEG_Cend_TRIM7_1 DEG_COP1_1 DEG_CRBN_cyclicCter_1 DEG_Kelch_actinfilin_1 DEG_Kelch_Keap1_1 DEG_Kelch_Keap1_2 DEG_Kelch_KLHL12_1 DEG_Kelch_KLHL3_1 DEG_MDM2_SWIB_1 DEG_Nend_Nbox_1 DEG_Nend_UBRbox_1 DEG_Nend_UBRbox_2 DEG_Nend_UBRbox_3 DEG_Nend_UBRbox_4 DEG_ODPH_VHL_1 DEG_SCF_FBW7_1 DEG_SCF_FBW7_2 DEG_SCF_FBXO31_1 DEG_SCF_SKP2-CKS1_1 DEG_SCF_TRCP1_1 DEG_SIAH_1 DOC_AGCK_PIF_1 DOC_AGCK_PIF_2 DOC_AGCK_PIF_3 DOC_ANK_TNKS_1 DOC_CDC14_PxL_1 DOC_CKS1_1 DOC_CYCLIN_D_Helix_1 DOC_CYCLIN_RevRxL_6 DOC_CYCLIN_RxL_1 DOC_CYCLIN_yClb1_LxF_4 DOC_CYCLIN_yClb3_PxF_3 DOC_CYCLIN_yCln2_LP_2 DOC_GSK3_Axin_1 DOC_MAPK_DCC_7 DOC_MAPK_FxFP_2 DOC_MAPK_gen_1 DOC_MAPK_GRA24_9 DOC_MAPK_HePTP_8 DOC_MAPK_JIP1_4 DOC_MAPK_MEF2A_6 DOC_MAPK_NFAT4_5 DOC_MAPK_RevD_3 DOC_MIT_MIM_1 DOC_PP1_MyPhoNE_1 DOC_PP1_RVXF_1 DOC_PP1_SILK_1 DOC_PP2A_B56_1 DOC_PP2A_KARD_1 DOC_PP2B_LxvP_1 DOC_PP2B_PxIxIT_1 DOC_PUB_PIM_1 DOC_RSK_DDVF_1 DOC_SPAK_OSR1_1 DOC_TBK1_STING_1 DOC_WD40_RPTOR_TOS_1 DOC_WW_Pin1_4 LIG_14-3-3_CanoR_1 LIG_14-3-3_ChREBP_3 LIG_14-3-3_CterR_2 LIG_ActinCP_CPI_1 LIG_ActinCP_TwfCPI_2 LIG_Actin_RPEL_3 LIG_Actin_WH2_1 LIG_Actin_WH2_2 LIG_ANK_PxLPxL_1 LIG_AP2alpha_1 LIG_AP2alpha_2 LIG_APCC_ABBA_1 LIG_APCC_Cbox_1 LIG_APCC_Cbox_2 LIG_AP_GAE_1 LIG_Arc_Nlobe_1 LIG_ARL_BART_1 LIG_BH_BH3_1 LIG_BIR_II_1 LIG_BIR_III_1 LIG_BIR_III_2 LIG_BIR_III_3 LIG_BIR_III_4 LIG_CaM_1-14-15-16_REV_1 LIG_CaM_1-26_7 LIG_CaM_1-5-10-14_3 LIG_CaM_1-8-14_4 LIG_CaM_1-8-9-10_5 LIG_CaM_1-8_REV_2 LIG_CaM_IQ_9 LIG_CaMK_CASK_1 LIG_CaM_NSCaTE_8 LIG_CAP-Gly_1 LIG_CAP-Gly_2 LIG_Clathr_ClatBox_1 LIG_Clathr_ClatBox_2 LIG_CNOT1_NIM_1 LIG_CSK_EPIYA_1 LIG_CtBP_PxDLS_1 LIG_deltaCOP1_diTrp_1 LIG_DLG_GKlike_1 LIG_Dynein_DLC8_1 LIG_EABR_CEP55_1 LIG_EF_ALG2_ABM_1 LIG_EF_ALG2_ABM_2 LIG_EH_1 LIG_eIF4E_1 LIG_eIF4E_2 LIG_EVH1_1 LIG_EVH1_2 LIG_EVH1_3 LIG_FAT_LD_1 LIG_FERM_MyoX_1 LIG_FZD_DVL_PDZ LIG_G3BP_FGDF_1 LIG_GBD_Chelix_1 LIG_GBD_WASP_1 LIG_GSK3_LRP6_1 LIG_GYF LIG_IBAR_NPY_1 LIG_IRF7_LxLS_2 LIG_IRFs_LxIS_1 LIG_KLC1_WD_1 LIG_KLC1_Yacidic_2 LIG_LIR_Apic_2 LIG_LIR_Gen_1 LIG_LIR_LC3C_4 LIG_LIR_Nem_3 LIG_LYPXL_L_2 LIG_LYPXL_S_1 LIG_LYPXL_yS_3 LIG_MYND_3 LIG_OCRL_FandH_1 LIG_PAM2_1 LIG_PAM2_2 LIG_PDZ_Class_1 LIG_PDZ_Class_2 LIG_PDZ_Class_3 LIG_PDZ_Wminus1_1 LIG_Pex14_1 LIG_Pex14_2 LIG_Pex14_3 LIG_Pex14_4 LIG_Pex3_1 LIG_PIP2_ANTH_1 LIG_PIP2_ENTH_1 LIG_PROFILIN_1 LIG_PTB_Apo_2 LIG_PTB_Phospho_1 LIG_SH2_CRK LIG_SH2_GRB2like LIG_SH2_NCK_1 LIG_SH2_PTP2 LIG_SH2_SFK_2 LIG_SH2_SFK_CTail_3 LIG_SH2_STAT3 LIG_SH2_STAT5 LIG_SH2_STAT6 LIG_SH3_1 LIG_SH3_2 LIG_SH3_3 LIG_SH3_4 LIG_SH3_CIN85_PxpxPR_1 LIG_SH3_PxRPPK_7 LIG_SH3_PxxDY_5 LIG_SH3_PxxPPRxxK_8 LIG_SH3_PxxxRxxKP_6 LIG_SPRY_1 LIG_SUFU_1 LIG_SxIP_EBH_1 LIG_TPR LIG_TRAF2like_MATH_loPxQ_2 LIG_TRAF2like_MATH_shPxQ_1 LIG_TRAF3_MATH_PxP_3 LIG_TRAF4_MATH_1 LIG_TRAF6_MATH_1 LIG_TYR_ITAM LIG_TYR_ITIM LIG_TYR_ITSM LIG_UFM1_UFIM_1 LIG_VCP_SHPBox_1 LIG_VCP_VBM_3 LIG_VCP_VIM_2 LIG_Vh1_VBS_1 LIG_WH1 LIG_WRC_WIRS_1 LIG_WW_1 LIG_WW_2 LIG_WW_3 MOD_AAK1BIKe_LxxQxTG_1 MOD_CAAXbox MOD_CDC14_SPxK_1 MOD_CDK_SPK_2 MOD_CDK_SPxK_1 MOD_CDK_SPxxK_3 MOD_CK1_1 MOD_CK2_1 MOD_DYRK1A_RPxSP_1 MOD_GSK3_1 MOD_LATS_1 MOD_LOK_YxT_1 MOD_NEK2_1 MOD_NEK2_2 MOD_NMyristoyl MOD_PIKK_1 MOD_PK_1 MOD_PKA_1 MOD_PKA_2 MOD_PKB_1 MOD_PLK MOD_Plk_1 MOD_Plk_2-3 MOD_Plk_4 MOD_PRMT_GGRGG_1 MOD_ProDKin_1 MOD_SPalmitoyl_2 MOD_SPalmitoyl_4 MOD_TYR_CSK MOD_TYR_DYR ELM:old_LIG_14-3-3_1 ELM:old_LIG_14-3-3_2 ELM:old_LIG_14-3-3_3 TRG_AP2beta_CARGO_1 TRG_Cilium_Arf4_1 TRG_Cilium_RVxP_2 TRG_DiLeu_BaEn_1 TRG_DiLeu_BaEn_2 TRG_DiLeu_BaEn_3 TRG_DiLeu_BaEn_4 TRG_DiLeu_BaLyEn_6 TRG_DiLeu_LyEn_5 TRG_ENDOCYTIC_2 TRG_ER_diArg_1 TRG_ER_diLys_1 TRG_ER_FFAT_1 TRG_ER_FFAT_2 TRG_Golgi_diPhe_1 TRG_LysEnd_APsAcLL_1 TRG_LysEnd_APsAcLL_3 TRG_LysEnd_GGAAcLL_1 TRG_LysEnd_GGAAcLL_2 TRG_NES_CRM1_1 TRG_NESrev_CRM1_2 TRG_PTS1 TRG_PTS2 )
Nucleus (also annotated in these classes: CLV_C14_Caspase3-7 CLV_Separin_Fungi CLV_Separin_Metazoa CLV_TASPASE1 DEG_APCC_DBOX_1 DEG_APCC_KENBOX_2 DEG_APCC_TPR_1 DEG_Cend_DCAF12_1 DEG_Cend_FEM1AC_1 DEG_Cend_FEM1B_2 DEG_Cend_KLHDC2_1 DEG_Cend_TRIM7_1 DEG_COP1 DEG_COP1_1 DEG_CRL4_CDT2_1 DEG_CRL4_CDT2_2 DEG_Kelch_Keap1_1 DEG_Kelch_Keap1_2 DEG_MDM2_SWIB_1 DEG_ODPH_VHL_1 DEG_SCF_COI1_1 DEG_SCF_FBW7_1 DEG_SCF_FBW7_2 DEG_SCF_FBXO31_1 DEG_SCF_SKP2-CKS1_1 DEG_SCF_TIR1_1 DEG_SCF_TRCP1_1 DEG_SIAH_1 DEG_SPOP_SBC_1 DOC_ANK_TNKS_1 DOC_CDC14_PxL_1 DOC_CKS1_1 DOC_CYCLIN_D_Helix_1 DOC_CYCLIN_RevRxL_6 DOC_CYCLIN_RxL_1 DOC_CYCLIN_yClb1_LxF_4 DOC_CYCLIN_yClb3_PxF_3 DOC_CYCLIN_yClb5_NLxxxL_5 DOC_CYCLIN_yCln2_LP_2 DOC_MAPK_DCC_7 DOC_MAPK_FxFP_2 DOC_MAPK_gen_1 DOC_MAPK_GRA24_9 DOC_MAPK_HePTP_8 DOC_MAPK_JIP1_4 DOC_MAPK_MEF2A_6 DOC_MAPK_NFAT4_5 DOC_MAPK_RevD_3 DOC_PIKK_1 DOC_PP1_MyPhoNE_1 DOC_PP1_RVXF_1 DOC_PP1_SILK_1 DOC_PP2A_B56_1 DOC_PP2A_KARD_1 DOC_PP2B_LxvP_1 DOC_PP2B_PxIxIT_1 DOC_PP4_FxxP_1 DOC_PP4_MxPP_1 DOC_USP7_MATH_1 DOC_USP7_MATH_2 DOC_USP7_UBL2_3 DOC_WW_Pin1_4 LIG_14-3-3_CanoR_1 LIG_14-3-3_ChREBP_3 LIG_14-3-3_CterR_2 LIG_ANK_PxLPxL_1 LIG_APCC_ABBA_1 LIG_APCC_Cbox_1 LIG_APCC_Cbox_2 LIG_ARL_BART_1 LIG_ARS2_EDGEI_1 LIG_BRCT_BRCA1_1 LIG_BRCT_BRCA1_2 LIG_BRCT_MDC1_1 LIG_CaM_1-14-15-16_REV_1 LIG_CaMK_CASK_1 LIG_CORNRBOX LIG_CSL_BTD_1 LIG_CtBP_PxDLS_1 LIG_CtBP_RRT_2 LIG_DCNL_PONY_1 LIG_EF_ALG2_ABM_1 LIG_EF_ALG2_ABM_2 LIG_EH1_1 LIG_FHA_1 LIG_FHA_2 LIG_GLEBS_BUB3_1 LIG_HCF-1_HBM_1 LIG_HOMEOBOX LIG_HP1_1 LIG_IRF7_LxLS_2 LIG_IRFs_LxIS_1 LIG_KEPE_1 LIG_KEPE_2 LIG_KEPE_3 LIG_LEDGF_IBM_1 LIG_LSD1_SNAG_1 LIG_MAD2 LIG_Menin_MBM1_1 LIG_MLH1_MIPbox_1 LIG_MSH2_SHIPbox_1 LIG_MTR4_AIM_1 LIG_Mtr4_Air2_1 LIG_Mtr4_Trf4_1 LIG_Mtr4_Trf4_2 LIG_MYND_1 LIG_MYND_2 LIG_MYND_3 LIG_NBox_RRM_1 LIG_NRBOX LIG_Nrd1CID_NIM_1 LIG_PALB2_WD40_1 LIG_PCNA_APIM_2 LIG_PCNA_PIPBox_1 LIG_PCNA_TLS_4 LIG_PCNA_yPIPBox_3 LIG_RBL1_LxSxE_2 LIG_RB_LxCxE_1 LIG_RB_pABgroove_1 LIG_REV1ctd_RIR_1 LIG_RPA_C_Plants LIG_RPA_C_Vert LIG_RRM_PRI_1 LIG_Rrp6Rrp47_Mtr4_1 LIG_Sin3_1 LIG_Sin3_2 LIG_Sin3_3 LIG_SUFU_1 LIG_SUMO_SIM_anti_2 LIG_SUMO_SIM_par_1 LIG_TPR LIG_Trf4_IWRxY_1 LIG_TRFH_1 LIG_UBA3_1 LIG_ULM_U2AF65_1 LIG_VCP_SHPBox_1 LIG_VCP_VBM_3 LIG_VCP_VIM_2 LIG_WD40_WDR5_VDV_1 LIG_WD40_WDR5_VDV_2 LIG_WD40_WDR5_WIN_1 LIG_WD40_WDR5_WIN_2 LIG_WD40_WDR5_WIN_3 LIG_WRPW_1 LIG_WRPW_2 LIG_WW_2 MOD_AAK1BIKe_LxxQxTG_1 MOD_CDC14_SPxK_1 MOD_CDK_SPK_2 MOD_CDK_SPxK_1 MOD_CDK_SPxxK_3 MOD_CK1_1 MOD_CK2_1 MOD_DYRK1A_RPxSP_1 MOD_GSK3_1 MOD_NEK2_1 MOD_NEK2_2 MOD_PIKK_1 MOD_PKA_1 MOD_PKA_2 MOD_PKB_1 MOD_PLK MOD_Plk_1 MOD_Plk_2-3 MOD_Plk_4 MOD_PRMT_GGRGG_1 MOD_ProDKin_1 MOD_SUMO_for_1 MOD_SUMO_rev_2 ELM:old_LIG_14-3-3_1 ELM:old_LIG_14-3-3_2 ELM:old_LIG_14-3-3_3 TRG_NES_CRM1_1 TRG_NESrev_CRM1_2 TRG_NLS_Bipartite_1 TRG_NLS_MonoCore_2 TRG_NLS_MonoExtC_3 TRG_NLS_MonoExtN_4 )


o 28 Instances for LIG_PTAP_UEV_1
(click table headers for sorting; Notes column: =Number of Switches, =Number of Interactions)
Acc., Gene-, NameStartEndSubsequenceLogic#Ev.OrganismNotes
B5TVE8 GRA14
B5TVE8_TOXGO
383 388 SHGGYRVQPTAPPAPASMLY TP 6 Toxoplasma gondii
1
D0V559 Rhoptry neck protein 5
D0V559_TOXGO
620 625 TASDAQIFPSAPADEGLQGF TP 4 Toxoplasma gondii
1
D0V559 Rhoptry neck protein 5
D0V559_TOXGO
586 591 VPIIVGTTPTAPLRTGGHLG TP 4 Toxoplasma gondii
1
P69616 ORF3
ORF3_HEVBU
95 100 SAPLGVTRPSAPPLPHVVDL TP 3 Hepatitis E virus (strain Burma)
P27588 NP
NCAP_MABVM
602 607 EPIRSPSSPSAPQEDTRMRE TP 3 Marburg virus - Musoke, Kenya, 1980
1
P08363 S10
VP8_BTV10
40 45 ISQPPRYAPSAPMPSSMPTV U 7 Bluetongue virus (serotype 10 / American isolate)
1
P14349 gag
GAG_FOAMV
283 288 REILPAPVPSAPPMIQYIPV TP 2 Human spumaretrovirus
P03345 gag
GAG_HTL1A
123 128 QIPPPYVEPTAPQVLPVMHP TP 6 Human T-cell lymphotrophic virus type 1 (strain ATK)
O14964 HGS
HGS_HUMAN
347 352 EEARKSPTPSAPVPLTEPAA TP 2 Homo sapiens (Human)
Q8WUM4 PDCD6IP
PDC6I_HUMAN
716 721 LQQSIAREPSAPSIPTPAYQ TP 3 Homo sapiens (Human)
Q6UWE0 LRSAM1
LRSM1_HUMAN
660 665 QEPPESVRPSAPPAELEVQA TP 2 Homo sapiens (Human)
Q6UWE0 LRSAM1
LRSM1_HUMAN
648 653 PPMGEVVTPTAPQEPPESVR TP 2 Homo sapiens (Human)
P03519 M
MATRX_VSIVA
36 41 EDTSMEYAPSAPIDKSYFGV FP 2 Vesicular stomatitis Indiana virus strain San Juan
O73557 Z
Z_LASSJ
80 85 TKLRPSAAPTAPPTGAADSI TP 2 Lassa virus Josiah
Q05128 VP40
VP40_EBOZM
6 11 MRRVILPTAPPEYMEAIYPV TP 1 Ebola virus - Mayinga, Zaire, 1976
P17282 gag
GAG_SIVCZ
464 469 NFVQNRTEPTAPPIESYGYQ TP 1 Simian immunodeficiency virus
O75674 TOM1L1
TM1L1_HUMAN
178 183 SSNPPTSVPTAPALSSVIAP TP 2 Homo sapiens (Human)
O14828 SCAMP3
SCAM3_HUMAN
63 68 PAPAPLPPPSAPSLQPSRKL TP 2 Homo sapiens (Human)
O75674 TOM1L1
TM1L1_HUMAN
309 314 EATNTTSEPSAPSQDLLDLS TP 2 Homo sapiens (Human)
P07567 gag
GAG_MPMV
209 214 PPPYNKATPSAPTVMAVVNP TP 2 Mason-Pfizer monkey virus
P18095 gag
GAG_HV2BE
455 460 TQAPQGLIPTAPPADPAAEL TP 1 Human immunodeficiency virus type 2 (ISOLATE BEN)
Q99816 TSG101
TS101_HUMAN
319 324 NDIDEVIIPTAPLYKQILNL TP 2 Homo sapiens (Human)
Q9H9H4 VPS37B
VP37B_HUMAN
184 189 PPRLPELAPTAPLPYPAPEA TP 2 Homo sapiens (Human)
O60291 MGRN1
MGRN1_HUMAN
405 410 LRAVSPAIPSAPLYEEITYS TP 5 Homo sapiens (Human)
P36383 GJC1
CXG1_HUMAN
283 288 NYPFTWNTPSAPPGYNIAVK U 2 Homo sapiens (Human)
P04591 gag
GAG_HV1H2
454 459 NFLQSRPEPTAPPEESFRSG TP 8 HIV-1 M:B_HXB2R
P03347 gag
GAG_HV1B1
466 471 PFLQSRPEPTAPPEESFRSG TP 1 Human immunodeficiency virus type 1 BH10
P03347 gag
GAG_HV1B1
454 459 NFLQSRPEPTAPPFLQSRPE TP 1 Human immunodeficiency virus type 1 BH10
Please cite: ELM-the Eukaryotic Linear Motif resource-2024 update. (PMID:37962385)

ELM data can be downloaded & distributed for non-commercial use according to the ELM Software License Agreement

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