ELM
The Eukaryotic Linear Motif resource for
Functional Sites in Proteins

LIG_PROFILIN_1

Accession:
Functional site class:
Polyproline profilin-binding motif
Functional site description:
Profilin is a key regulator of the cytoskeleton due to its actin-binding and filament-inducing activity. Solved structures of profilin (2PAV, 2V8C and 2V8F) show that it bears a groove to accept short poly-proline sequence motifs with seven or eight residues making contact. A sequence with at least five prolines is required for the binding although they do not all need to be consecutive (Ferron,2007). The peptide prolines make hydrophobic interactions with amino acids in the profilin pocket while the peptide backbone provides H-bonds that precisely position the peptide. Profilin does not act alone but cooperates with other actin filament promoting proteins. These include Mena, Ena/VASP, mDia1, CAPPUCCINO, Bni1p, cdc12, formin and WASF1. In formins, the profilin-binding region is known as FH1 and contains multiple profilin binding sites. Most proteins that bind profilin through Pro-motifs are likely to be able to bind multiple profilin molecules.
ELM Description:
The surface of profilin has a hydrophobic groove which accepts a Pro-rich motif (2PAV, 2V8C). Tyr3, Trp6, Trp31 and His139 are involved in the binding of the Pro-rich motifs and are conserved in the sequences of different eukaryotic organisms from Homo sapiens to Acanthamoeba; His139 is sometimes replaced by Phe (Mahoney,1997).
The ELM motif pattern spans seven residues. The first five residues of the motif are the most conserved with positions 6-7 being more variable. Proline at the +4 position (2V8C; 2V8F) can be replaced by Alanine (PDB :2PAV): Proline at + 4 inserts inside the groove and it is stacked against the aromatic chains of the residues lining the groove; Alanine, when present at +4, shows the same orientation and it is extremely conserved among different species from Homo sapiens to both Xenopus laevis and coelacanth (Latimeria). Kursula and collaborators (Kursula,2008) superimposed two different sequences that bind into the groove and they reported that the second, the third and the fourth Proline of IPPPPPLP (O08808, 635-642) have an orientation comparable with the third, the fourth and the fifth proline of GPPPPPGPPPPP (P70460, 167-174). Backbone oxygens at +1 and +4 form H-bonds to Profilin: For example, in mDIAP these residues form H-bonds with Trp3 and Tyr6. Leucine is a frequently observed residue either at position +6 or +7. This residue is found also in WASF1 and not only determines the polarity of the interaction but also is responsible for the orientation of the peptides (Ferron,2007). The ELM pattern finds most of the Pro-rich repeats in the profilin-binding regions but may miss some which have a rarer Pro substitution.
Pattern: PPP[PA]P((P[LGP])|([LG]P))
Pattern Probability: 4.881e-07
Present in taxon: Eukaryota
Interaction Domain:
Profilin (PF00235) Profilin (Stochiometry: 1 : 1)
o See 16 Instances for LIG_PROFILIN_1
Profilin (PF00235) is an abundant predominantly cytosolic protein that possesses an actin-binding activity (7758455;Ferron,2007) whereby it regulates the actin cytoskeleton; therefore, it is involved in many different biological processes ranging from cadherin binding (7758455) to actin-based mobility of pathogenic Listeria (9204886). In Homo sapiens there are two genes on chromosome 17, named PFN1 and PFN2, that code for two proteins (P07737 and P35080) having the same function even though the protein sequence is slightly different, as noted by the isoelectric point (pI) shows (pI (P07737 = 8.4; pI P35080 = 5.9)(7758455). The surface of profilins has two grooves, one required for actin binding and the other for binding proline-rich peptides (2PAV; 2V8C).
Actin polymerization is the process responsible for the formation of microfilaments. Each microfilament consists of a number of actin polymers plus other accessory proteins. Microfilaments are required for different functions from endocytosis/exocytosis to muscular contraction.
Several properties allow profilin to be a key regulator of the actin polymerization process. In particular, at high concentrations, it maintains actin in an unpolymerized status while it enhances the aforementioned process at low concentration (7758455); it binds different cytoskeletal proteins such as Ena/VASP (Kursula,2008) or Arp2/3. Profilin’s role in actin filament regulation is always undertaken cooperatively with sets of other proteins. The first step is called ‘actin nucleation’ and it sees the formation of an actin core initiated with three actin monomers from which a new actin filament will elongate. Among proteins that initiate nucleus formation, a major role is played by formins, a family of proteins that have a strong conserved C-terminal Formin Homology-2 (FH2) domain with an upstream formin homology-1 (FH1) domain. FH1 contains the Pro-rich profilin-binding motifs while FH2 interacts with monomers of globular actin (G-actin) and initiates nucleation. Higashida et al. (15044801) reported that mDia1, a member of the formin family, accelerates the actin nucleation rate and it associates with the barbed end of growing actin filament.
Enabled/Vasodilator-stimulated phosphoprotein (Ena/VASP) is another major protein in filament elongation requiring preformed F-actin to initiate further elongation. Ena/VASP contains different domains: N-terminal EVH1 domains, a Pro-rich domain and a C-terminal EVH2 domain (Siton-Mendelson,2017). Furthermore, the proline-rich domain could be split into three subdomains: a regulatory site, a recruiting domain which includes multiple repeats of the GPPPPP sequence and a "loading poly-Pro site", which is required to deliver the profilin-actin complex from the poly-Pro region to the globular-actin-binding domain (GAB) of VASP (Ferron,2007). The proline-rich domain is responsible for the profilin-VASP interaction (Kursula,2008). The ability of VASP to promote actin filament elongation depends on its capability to recruit G-actin monomers and include them in the newly synthesized filament.
Profilin regulation of actin cytoskeletal organization is also involved in neurulation and commissure formation. Axonal growth responds to multiple cues present in the extracellular environment and this response triggers a signaling response which affect the cytoskeletal structures (26783725). Mammalian enabled (Mena) is a VASP family protein thought to be the linker between the signaling input and actin cytoskeleton remodelling. It is reported that Mena interacts with profilin thanks to a proline-rich segment (10069337) and Mena-deficient mice show abnormalities in the brain and die in utero.
Profilin interactions were also reported in Insects (Manseau,1996) and Fungi (Chang,1997;Evangelista,1997). In Drosophila, CAPPUCCINO (Q24120) interacts with profilin during embryonic development (Manseau,1996); in Saccharomyces cerevisiae Bni1pa yeast formin, associates with profilin and in Schizosaccharomyces pombe the complex cdc12p-profilin plays a key role during cell division (Mahoney,1997). All these proteins have Pro-rich motifs but the profilin interactions were only tested at whole protein level.
Intracellular pathogens need to control the actin cytoskeleton and several bacterial effector proteins are known to contain short motifs involved in actin filament regulation. Although no bacterial profilin-binding motif has been reported yet, several bacterial proteins functionally mimic profilin-interacting proteins to infect the host cells: for instance the organisms Burkholderia pseudomallei, Listeriamonocytogenes and Rickettsia (Siton-Mendelson,2017). The BimA effector of Burkholderia seems to mimic the function of VASP as it is also capable of nucleating actin (Benanti,2015) and has a long poly-Proline sequence thought likely to bind profilin. Bacteria from the genus Listeria use actin filaments as a sort of trail to move into the cell they have infected (9204886). The entire process requires ActA, a bacterial protein that is exposed on the cell surface, and cellular VASP, which interacts with ActA, and, in turn, tethers profilin to promote actin polymerization.
o 8 selected references:


o 7 GO-Terms:
Biological Process:
Cytoskeleton Organization (also annotated in these classes: DOC_MAPK_JIP1_4 DOC_MAPK_NFAT4_5 LIG_SH3_CIN85_PxpxPR_1 )
Regulation Of Cytoskeleton Organization (also annotated in class: )
Actin Filament Polymerization (also annotated in these classes: LIG_EVH1_1 LIG_GBD_Chelix_1 LIG_WRC_WIRS_1 )
Cellular Compartment:
Cytosol (also annotated in these classes: CLV_C14_Caspase3-7 CLV_Separin_Fungi CLV_Separin_Metazoa DEG_APCC_DBOX_1 DEG_APCC_KENBOX_2 DEG_APCC_TPR_1 DEG_Cend_DCAF12_1 DEG_Cend_FEM1AC_1 DEG_Cend_FEM1B_2 DEG_Cend_KLHDC2_1 DEG_Cend_TRIM7_1 DEG_COP1_1 DEG_CRBN_cyclicCter_1 DEG_Kelch_actinfilin_1 DEG_Kelch_Keap1_1 DEG_Kelch_Keap1_2 DEG_Kelch_KLHL12_1 DEG_Kelch_KLHL3_1 DEG_MDM2_SWIB_1 DEG_Nend_Nbox_1 DEG_Nend_UBRbox_1 DEG_Nend_UBRbox_2 DEG_Nend_UBRbox_3 DEG_Nend_UBRbox_4 DEG_ODPH_VHL_1 DEG_SCF_FBW7_1 DEG_SCF_FBW7_2 DEG_SCF_FBXO31_1 DEG_SCF_SKP2-CKS1_1 DEG_SCF_TRCP1_1 DEG_SIAH_1 DOC_AGCK_PIF_1 DOC_AGCK_PIF_2 DOC_AGCK_PIF_3 DOC_ANK_TNKS_1 DOC_CDC14_PxL_1 DOC_CKS1_1 DOC_CYCLIN_D_Helix_1 DOC_CYCLIN_RevRxL_6 DOC_CYCLIN_RxL_1 DOC_CYCLIN_yClb1_LxF_4 DOC_CYCLIN_yClb3_PxF_3 DOC_CYCLIN_yCln2_LP_2 DOC_GSK3_Axin_1 DOC_MAPK_DCC_7 DOC_MAPK_FxFP_2 DOC_MAPK_gen_1 DOC_MAPK_GRA24_9 DOC_MAPK_HePTP_8 DOC_MAPK_JIP1_4 DOC_MAPK_MEF2A_6 DOC_MAPK_NFAT4_5 DOC_MAPK_RevD_3 DOC_MIT_MIM_1 DOC_PP1_MyPhoNE_1 DOC_PP1_RVXF_1 DOC_PP1_SILK_1 DOC_PP2A_B56_1 DOC_PP2A_KARD_1 DOC_PP2B_LxvP_1 DOC_PP2B_PxIxIT_1 DOC_PUB_PIM_1 DOC_RSK_DDVF_1 DOC_SPAK_OSR1_1 DOC_TBK1_STING_1 DOC_WD40_RPTOR_TOS_1 DOC_WW_Pin1_4 LIG_14-3-3_CanoR_1 LIG_14-3-3_ChREBP_3 LIG_14-3-3_CterR_2 LIG_ActinCP_CPI_1 LIG_ActinCP_TwfCPI_2 LIG_Actin_RPEL_3 LIG_Actin_WH2_1 LIG_Actin_WH2_2 LIG_ANK_PxLPxL_1 LIG_AP2alpha_1 LIG_AP2alpha_2 LIG_APCC_ABBA_1 LIG_APCC_Cbox_1 LIG_APCC_Cbox_2 LIG_AP_GAE_1 LIG_Arc_Nlobe_1 LIG_ARL_BART_1 LIG_BH_BH3_1 LIG_BIR_II_1 LIG_BIR_III_1 LIG_BIR_III_2 LIG_BIR_III_3 LIG_BIR_III_4 LIG_CaM_1-14-15-16_REV_1 LIG_CaM_1-26_7 LIG_CaM_1-5-10-14_3 LIG_CaM_1-8-14_4 LIG_CaM_1-8-9-10_5 LIG_CaM_1-8_REV_2 LIG_CaM_IQ_9 LIG_CaMK_CASK_1 LIG_CaM_NSCaTE_8 LIG_CAP-Gly_1 LIG_CAP-Gly_2 LIG_Clathr_ClatBox_1 LIG_Clathr_ClatBox_2 LIG_CNOT1_NIM_1 LIG_CSK_EPIYA_1 LIG_CtBP_PxDLS_1 LIG_deltaCOP1_diTrp_1 LIG_DLG_GKlike_1 LIG_Dynein_DLC8_1 LIG_EABR_CEP55_1 LIG_EF_ALG2_ABM_1 LIG_EF_ALG2_ABM_2 LIG_EH_1 LIG_eIF4E_1 LIG_eIF4E_2 LIG_EVH1_1 LIG_EVH1_2 LIG_EVH1_3 LIG_FAT_LD_1 LIG_FERM_MyoX_1 LIG_FZD_DVL_PDZ LIG_G3BP_FGDF_1 LIG_GBD_Chelix_1 LIG_GBD_WASP_1 LIG_GSK3_LRP6_1 LIG_GYF LIG_IBAR_NPY_1 LIG_IRF7_LxLS_2 LIG_IRFs_LxIS_1 LIG_KLC1_WD_1 LIG_KLC1_Yacidic_2 LIG_LIR_Apic_2 LIG_LIR_Gen_1 LIG_LIR_LC3C_4 LIG_LIR_Nem_3 LIG_LYPXL_L_2 LIG_LYPXL_S_1 LIG_LYPXL_yS_3 LIG_MYND_3 LIG_OCRL_FandH_1 LIG_PAM2_1 LIG_PAM2_2 LIG_PDZ_Class_1 LIG_PDZ_Class_2 LIG_PDZ_Class_3 LIG_PDZ_Wminus1_1 LIG_Pex14_1 LIG_Pex14_2 LIG_Pex14_3 LIG_Pex14_4 LIG_Pex3_1 LIG_PIP2_ANTH_1 LIG_PIP2_ENTH_1 LIG_PTAP_UEV_1 LIG_PTB_Apo_2 LIG_PTB_Phospho_1 LIG_SH2_CRK LIG_SH2_GRB2like LIG_SH2_NCK_1 LIG_SH2_PTP2 LIG_SH2_SFK_2 LIG_SH2_SFK_CTail_3 LIG_SH2_STAT3 LIG_SH2_STAT5 LIG_SH2_STAT6 LIG_SH3_1 LIG_SH3_2 LIG_SH3_3 LIG_SH3_4 LIG_SH3_CIN85_PxpxPR_1 LIG_SH3_PxRPPK_7 LIG_SH3_PxxDY_5 LIG_SH3_PxxPPRxxK_8 LIG_SH3_PxxxRxxKP_6 LIG_SPRY_1 LIG_SUFU_1 LIG_SxIP_EBH_1 LIG_TPR LIG_TRAF2like_MATH_loPxQ_2 LIG_TRAF2like_MATH_shPxQ_1 LIG_TRAF3_MATH_PxP_3 LIG_TRAF4_MATH_1 LIG_TRAF6_MATH_1 LIG_TYR_ITAM LIG_TYR_ITIM LIG_TYR_ITSM LIG_UFM1_UFIM_1 LIG_VCP_SHPBox_1 LIG_VCP_VBM_3 LIG_VCP_VIM_2 LIG_Vh1_VBS_1 LIG_WH1 LIG_WRC_WIRS_1 LIG_WW_1 LIG_WW_2 LIG_WW_3 MOD_AAK1BIKe_LxxQxTG_1 MOD_CAAXbox MOD_CDC14_SPxK_1 MOD_CDK_SPK_2 MOD_CDK_SPxK_1 MOD_CDK_SPxxK_3 MOD_CK1_1 MOD_CK2_1 MOD_DYRK1A_RPxSP_1 MOD_GSK3_1 MOD_LATS_1 MOD_LOK_YxT_1 MOD_NEK2_1 MOD_NEK2_2 MOD_NMyristoyl MOD_PIKK_1 MOD_PK_1 MOD_PKA_1 MOD_PKA_2 MOD_PKB_1 MOD_PLK MOD_Plk_1 MOD_Plk_2-3 MOD_Plk_4 MOD_PRMT_GGRGG_1 MOD_ProDKin_1 MOD_SPalmitoyl_2 MOD_SPalmitoyl_4 MOD_TYR_CSK MOD_TYR_DYR ELM:old_LIG_14-3-3_1 ELM:old_LIG_14-3-3_2 ELM:old_LIG_14-3-3_3 TRG_AP2beta_CARGO_1 TRG_Cilium_Arf4_1 TRG_Cilium_RVxP_2 TRG_DiLeu_BaEn_1 TRG_DiLeu_BaEn_2 TRG_DiLeu_BaEn_3 TRG_DiLeu_BaEn_4 TRG_DiLeu_BaLyEn_6 TRG_DiLeu_LyEn_5 TRG_ENDOCYTIC_2 TRG_ER_diArg_1 TRG_ER_diLys_1 TRG_ER_FFAT_1 TRG_ER_FFAT_2 TRG_Golgi_diPhe_1 TRG_LysEnd_APsAcLL_1 TRG_LysEnd_APsAcLL_3 TRG_LysEnd_GGAAcLL_1 TRG_LysEnd_GGAAcLL_2 TRG_NES_CRM1_1 TRG_NESrev_CRM1_2 TRG_PTS1 TRG_PTS2 )
Actin Cytoskeleton (also annotated in these classes: LIG_GBD_Chelix_1 LIG_SH2_CRK LIG_SH2_NCK_1 LIG_Vh1_VBS_1 LIG_WH1 LIG_WRC_WIRS_1 )
Molecular Function:
Profilin Binding (also annotated in class: )
Actin Binding (also annotated in these classes: LIG_Actin_RPEL_3 LIG_Actin_WH2_1 LIG_Actin_WH2_2 LIG_WRC_WIRS_1 )


o 16 Instances for LIG_PROFILIN_1
(click table headers for sorting; Notes column: =Number of Switches, =Number of Interactions)
Acc., Gene-, NameStartEndSubsequenceLogic#Ev.OrganismNotes
Q10059 cdc12
CDC12_SCHPO
948 954 PAFPPPPPPPPPLVSAAGGK TP 1 Schizosaccharomyces pombe 972h-
P41832 BNI1
BNI1_YEAST
1285 1291 APPPPPPPPPPPPMALFGKP TP 1 Saccharomyces cerevisiae S288c
Q24120 capu
CAPU_DROME
520 526 LANYGAPPPPPPPPPGSGSA TP 1 Drosophila melanogaster (Fruit fly)
Q24120 capu
CAPU_DROME
507 513 PPPPPPPPPPPPPLANYGAP TP 1 Drosophila melanogaster (Fruit fly)
Q24120 capu
CAPU_DROME
488 494 AVAPPPPPPPPPLHAFVAPP TP 1 Drosophila melanogaster (Fruit fly)
Q92558 WASF1
WASF1_HUMAN
326 332 VSPTPPPPPPPLPSALSTSS TP 2 Homo sapiens (Human)
O08808 Diaph1
DIAP1_MOUSE
697 703 PGSVGVPPPPPLPGGPGLPP TP 1 Mus musculus (House mouse)
O08808 Diaph1
DIAP1_MOUSE
685 691 GGTGIPPPPPPLPGSVGVPP TP 1 Mus musculus (House mouse)
O08808 Diaph1
DIAP1_MOUSE
672 678 PGATAIPPPPPLPGGTGIPP TP 1 Mus musculus (House mouse)
O08808 Diaph1
DIAP1_MOUSE
660 666 PGATAIPPPPPLPGATAIPP TP 1 Mus musculus (House mouse)
O08808 Diaph1
DIAP1_MOUSE
612 618 PPGTCIPPPPPLPGGACIPP TP 1 Mus musculus (House mouse)
O08808 Diaph1
DIAP1_MOUSE
589 595 TVIPPPPPPPPLPGGVVPPS TP 1 Mus musculus (House mouse)
O08808 Diaph1
DIAP1_MOUSE
648 654 PGVASIPPPPPLPGATAIPP TP 5 Mus musculus (House mouse)
O08808 Diaph1
DIAP1_MOUSE
636 642 PGSAAIPPPPPLPGVASIPP TP 5 Mus musculus (House mouse)
P70460 Vasp
VASP_MOUSE
166 172 APPAGGPPPPPGPPPPPGPP TP 4 Mus musculus (House mouse)
P50552 VASP
VASP_HUMAN
204 210 HGAGGGPPPAPPLPAAQGPG TP 3 Homo sapiens (Human)
Please cite: ELM-the Eukaryotic Linear Motif resource-2024 update. (PMID:37962385)

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