| Accession: | |
|---|---|
| Functional site class: | Polyproline profilin-binding motif |
| Functional site description: | Profilin is a key regulator of the cytoskeleton due to its actin-binding and filament-inducing activity. Solved structures of profilin (2PAV, 2V8C and 2V8F) show that it bears a groove to accept short poly-proline sequence motifs with seven or eight residues making contact. A sequence with at least five prolines is required for the binding although they do not all need to be consecutive (Ferron,2007). The peptide prolines make hydrophobic interactions with amino acids in the profilin pocket while the peptide backbone provides H-bonds that precisely position the peptide. Profilin does not act alone but cooperates with other actin filament promoting proteins. These include Mena, Ena/VASP, mDia1, CAPPUCCINO, Bni1p, cdc12, formin and WASF1. In formins, the profilin-binding region is known as FH1 and contains multiple profilin binding sites. Most proteins that bind profilin through Pro-motifs are likely to be able to bind multiple profilin molecules. |
| ELM Description: | The surface of profilin has a hydrophobic groove which accepts a Pro-rich motif (2PAV, 2V8C). Tyr3, Trp6, Trp31 and His139 are involved in the binding of the Pro-rich motifs and are conserved in the sequences of different eukaryotic organisms from Homo sapiens to Acanthamoeba; His139 is sometimes replaced by Phe (Mahoney,1997). The ELM motif pattern spans seven residues. The first five residues of the motif are the most conserved with positions 6-7 being more variable. Proline at the +4 position (2V8C; 2V8F) can be replaced by Alanine (PDB :2PAV): Proline at + 4 inserts inside the groove and it is stacked against the aromatic chains of the residues lining the groove; Alanine, when present at +4, shows the same orientation and it is extremely conserved among different species from Homo sapiens to both Xenopus laevis and coelacanth (Latimeria). Kursula and collaborators (Kursula,2008) superimposed two different sequences that bind into the groove and they reported that the second, the third and the fourth Proline of IPPPPPLP (O08808, 635-642) have an orientation comparable with the third, the fourth and the fifth proline of GPPPPPGPPPPP (P70460, 167-174). Backbone oxygens at +1 and +4 form H-bonds to Profilin: For example, in mDIAP these residues form H-bonds with Trp3 and Tyr6. Leucine is a frequently observed residue either at position +6 or +7. This residue is found also in WASF1 and not only determines the polarity of the interaction but also is responsible for the orientation of the peptides (Ferron,2007). The ELM pattern finds most of the Pro-rich repeats in the profilin-binding regions but may miss some which have a rarer Pro substitution. |
| Pattern: | PPP[PA]P((P[LGP])|([LG]P)) |
| Pattern Probability: | 4.881e-07 |
| Present in taxon: | Eukaryota |
| Interaction Domain: |
Profilin (PF00235)
Profilin
(Stochiometry: 1 : 1)
|