BiocGenerics
DOI:
10.18129/B9.bioc.BiocGenerics
S4 generic functions for Bioconductor
Bioconductor version: Release (3.5)
S4 generic functions needed by many Bioconductor packages.
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("BiocGenerics")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("BiocGenerics")
Documentation
Details
Version
0.22.1
In Bioconductor since
BioC 2.10 (R-2.15) (5.5 years)
License
Artistic-2.0
Depends
methods, utils, graphics, stats, parallel
Imports
methods, utils, graphics, stats, parallel
LinkingTo
Suggests
Biobase,
S4Vectors,
IRanges,
GenomicRanges,
AnnotationDbi,
oligoClasses,
oligo,
affyPLM,
flowClust,
affy,
DESeq2,
MSnbase,
annotate,
RUnit
SystemRequirements
Enhances
Depends On Me
ACME,
affy,
affyPLM,
altcdfenvs,
AnnotationDbi,
AnnotationForge,
AnnotationHub,
ATACseqQC,
beadarray,
bioassayR,
Biobase,
Biostrings,
BSgenome,
bsseq,
Cardinal,
Category,
categoryCompare,
ChAMPdata,
chipseq,
ChIPseqR,
ChromHeatMap,
cleanUpdTSeq,
codelink,
consensusSeekeR,
copynumber,
CRISPRseek,
cummeRbund,
DelayedArray,
DESeq,
dexus,
ensembldb,
ensemblVEP,
ExperimentHub,
ExperimentHubData,
FEM,
flowQ,
geneplotter,
GenomeInfoDb,
genomeIntervals,
GenomicAlignments,
GenomicFeatures,
GenomicFiles,
GenomicRanges,
GenomicScores,
Genominator,
genoset,
ggbio,
girafe,
graph,
GRridge,
GSEABase,
GUIDEseq,
HelloRanges,
htSeqTools,
interactiveDisplay,
interactiveDisplayBase,
IRanges,
MBASED,
MeSHDbi,
meshr,
methyAnalysis,
MIGSA,
MineICA,
minfi,
MLInterfaces,
MotifDb,
MotIV,
MSnbase,
multtest,
NADfinder,
oligo,
OrganismDbi,
pandaR,
Pbase,
PICS,
plethy,
PSICQUIC,
PWMEnrich,
RareVariantVis,
REDseq,
Repitools,
rMAT,
RNAprobR,
RnBeads,
RPA,
rsbml,
S4Vectors,
scsR,
shinyMethyl,
ShortRead,
simpleaffy,
simulatorZ,
soGGi,
TEQC,
tigre,
topGO,
UNDO,
UniProt.ws,
VanillaICE,
VariantAnnotation,
VariantFiltering,
XVector,
yamss
Imports Me
affycoretools,
affylmGUI,
AllelicImbalance,
AneuFinder,
annmap,
annotate,
AnnotationDbi,
AnnotationHubData,
ArrayExpressHTS,
ASpli,
bamsignals,
biocGraph,
biosvd,
biovizBase,
BiSeq,
blima,
BrowserViz,
BrowserVizDemo,
BSgenome,
BubbleTree,
bumphunter,
casper,
cellHTS2,
cgdv17,
cghMCR,
ChemmineDrugs,
ChemmineOB,
ChemmineR,
ChIPComp,
chipenrich,
chipenrich.data,
ChIPpeakAnno,
ChIPQC,
ChIPseeker,
chipseq,
clusterSeq,
cn.mops,
CNEr,
CNPBayes,
cobindR,
compEpiTools,
crlmm,
crossmeta,
csaw,
cummeRbund,
curatedCRCData,
curatedOvarianData,
ddCt,
DESeq2,
destiny,
DEXSeq,
diffHic,
DirichletMultinomial,
DOQTL,
DRIMSeq,
DrugVsDisease,
easyRNASeq,
EBImage,
EDASeq,
eiR,
eisa,
ELMER,
epigenomix,
epivizrStandalone,
erma,
FamAgg,
fastseg,
ffpe,
FindMyFriends,
flowBin,
flowClust,
flowCore,
flowFP,
flowQ,
FlowSOM,
flowStats,
flowWorkspace,
fmcsR,
frma,
FunciSNP,
GA4GHclient,
gcapc,
gCMAPWeb,
genbankr,
geneAttribution,
geneClassifiers,
GENESIS,
GenomicAlignments,
GenomicInteractions,
GenomicTuples,
genotypeeval,
GenVisR,
GGBase,
GGtools,
goseq,
GOTHiC,
gQTLBase,
gQTLstats,
GSVA,
Gviz,
gwascat,
HDF5Array,
heatmaps,
hiReadsProcessor,
hopach,
HTSeqGenie,
IHW,
IHWpaper,
IMAS,
INSPEcT,
intansv,
InteractionSet,
IntEREst,
IONiseR,
isomiRs,
IVAS,
JunctionSeq,
KCsmart,
KEGGandMetacoreDzPathwaysGEO,
KEGGdzPathwaysGEO,
LOLA,
LVSmiRNA,
M3D,
MAST,
matter,
MEAL,
metaMS,
MethylAid,
methylPipe,
methylumi,
mimager,
MinimumDistance,
MiRaGE,
mogsa,
monocle,
motifbreakR,
msa,
MultiAssayExperiment,
MultiDataSet,
MutationalPatterns,
mzR,
NarrowPeaks,
ncdfFlow,
npGSEA,
nucleR,
oligoClasses,
parglms,
pbcmc,
pcaMethods,
pdInfoBuilder,
phyloseq,
piano,
PING,
plrs,
podkat,
prada,
ProCoNA,
profileScoreDist,
pRoloc,
pwOmics,
qsea,
QuasR,
R3CPET,
R453Plus1Toolbox,
RaggedExperiment,
ramwas,
RCAS,
RCyjs,
RCytoscape,
recoup,
REDseq,
RefNet,
REMP,
ReportingTools,
RGalaxy,
RGSEA,
RiboProfiling,
Ringo,
RJMCMCNucleosomes,
rMAT,
roar,
Rqc,
rqubic,
Rsamtools,
rsbml,
rtracklayer,
S4Vectors,
scater,
SGSeq,
signeR,
simpleaffy,
SLGI,
SNPhood,
SNPlocs.Hsapiens.dbSNP144.GRCh37,
SNPlocs.Hsapiens.dbSNP144.GRCh38,
SNPlocs.Hsapiens.dbSNP149.GRCh38,
SNPlocs.Hsapiens.dbSNP150.GRCh38,
snpStats,
spliceSites,
SplicingGraphs,
sscu,
STAN,
Streamer,
SummarizedExperiment,
systemPipeR,
systemPipeRdata,
TarSeqQC,
TCseq,
TFBSTools,
transcriptR,
TransView,
triform,
TSRchitect,
TSSi,
TVTB,
unifiedWMWqPCR,
uSORT,
VariantTools,
VariantToolsData,
wavClusteR,
xcms,
XDE,
XtraSNPlocs.Hsapiens.dbSNP144.GRCh37,
XtraSNPlocs.Hsapiens.dbSNP144.GRCh38,
XVector
Suggests Me
acde,
AIMS,
ArrayTV,
ASSET,
BaalChIP,
baySeq,
bigmelon,
bigmemoryExtras,
BiocCheck,
BiocInstaller,
BiocParallel,
BiocStyle,
biocViews,
BioMedR,
biosigner,
BiRewire,
BLMA,
CAFE,
CAMERA,
CancerSubtypes,
CAnD,
CausalR,
ccrepe,
CellNOptR,
CexoR,
ChIPXpress,
CHRONOS,
CINdex,
clipper,
clonotypeR,
clustComp,
CNORfeeder,
CNORfuzzy,
CNVPanelizer,
coMET,
ConnectivityMap,
cosmiq,
COSNet,
cpvSNP,
cydar,
cytofkit,
DAPAR,
DBChIP,
DEGreport,
DEsubs,
DMRcaller,
DMRcate,
ENCODExplorer,
ENmix,
epiNEM,
EventPointer,
fCCAC,
FGNet,
flowCL,
flowQB,
FlowRepositoryR,
flowTime,
focalCall,
gCMAP,
gCrisprTools,
gdsfmt,
GEM,
GENE.E,
GeneNetworkBuilder,
GeneOverlap,
geneplast,
geneRxCluster,
geNetClassifier,
genomation,
GEOquery,
GMRP,
GOstats,
GraphPAC,
GreyListChIP,
grndata,
GWASTools,
h5vc,
Harman,
HarmanData,
hiAnnotator,
hierGWAS,
hypergraph,
iCARE,
iClusterPlus,
illuminaio,
InPAS,
INPower,
IPO,
kebabs,
KEGGREST,
ldblock,
LINC,
mAPKL,
massiR,
MatrixRider,
MBttest,
mdgsa,
Mergeomics,
MeSH.Aca.eg.db,
MeSH.Aga.PEST.eg.db,
MeSH.Ame.eg.db,
MeSH.Aml.eg.db,
MeSH.Ana.eg.db,
MeSH.Ani.FGSC.eg.db,
MeSH.AOR.db,
MeSH.Ath.eg.db,
MeSH.Atu.K84.eg.db,
MeSH.Bfl.eg.db,
MeSH.Bsu.168.eg.db,
MeSH.Bsu.TUB10.eg.db,
MeSH.Bta.eg.db,
MeSH.Cal.SC5314.eg.db,
MeSH.Cbr.eg.db,
MeSH.Cel.eg.db,
MeSH.Cfa.eg.db,
MeSH.Cin.eg.db,
MeSH.Cja.eg.db,
MeSH.Cpo.eg.db,
MeSH.Cre.eg.db,
MeSH.Dan.eg.db,
MeSH.db,
MeSH.Dda.3937.eg.db,
MeSH.Ddi.AX4.eg.db,
MeSH.Der.eg.db,
MeSH.Dgr.eg.db,
MeSH.Dme.eg.db,
MeSH.Dmo.eg.db,
MeSH.Dpe.eg.db,
MeSH.Dre.eg.db,
MeSH.Dse.eg.db,
MeSH.Dsi.eg.db,
MeSH.Dvi.eg.db,
MeSH.Dya.eg.db,
MeSH.Eco.55989.eg.db,
MeSH.Eco.ED1a.eg.db,
MeSH.Eco.IAI39.eg.db,
MeSH.Eco.K12.MG1655.eg.db,
MeSH.Eco.O157.H7.Sakai.eg.db,
MeSH.Eco.UMN026.eg.db,
MeSH.Eqc.eg.db,
MeSH.Gga.eg.db,
MeSH.Gma.eg.db,
MeSH.Hsa.eg.db,
MeSH.Laf.eg.db,
MeSH.Lma.eg.db,
MeSH.Mdo.eg.db,
MeSH.Mes.eg.db,
MeSH.Mga.eg.db,
MeSH.Miy.eg.db,
MeSH.Mml.eg.db,
MeSH.Mmu.eg.db,
MeSH.Mtr.eg.db,
MeSH.Nle.eg.db,
MeSH.Oan.eg.db,
MeSH.Ocu.eg.db,
MeSH.Oni.eg.db,
MeSH.Osa.eg.db,
MeSH.Pab.eg.db,
MeSH.Pae.PAO1.eg.db,
MeSH.PCR.db,
MeSH.Pfa.3D7.eg.db,
MeSH.Pto.eg.db,
MeSH.Ptr.eg.db,
MeSH.Rno.eg.db,
MeSH.Sce.S288c.eg.db,
MeSH.Sco.A32.eg.db,
MeSH.Sil.eg.db,
MeSH.Spo.972h.eg.db,
MeSH.Spu.eg.db,
MeSH.Ssc.eg.db,
MeSH.Syn.eg.db,
MeSH.Tbr.9274.eg.db,
MeSH.Tgo.ME49.eg.db,
MeSH.Tgu.eg.db,
MeSH.Vvi.eg.db,
MeSH.Xla.eg.db,
MeSH.Xtr.eg.db,
MeSH.Zma.eg.db,
Metab,
MetaboSignal,
metagene,
metagenomeSeq,
metaseqR,
MetCirc,
methylInheritance,
MIGSAdata,
miRcomp,
mirIntegrator,
miRLAB,
Mirsynergy,
motifStack,
MSnID,
multiClust,
MultiMed,
multiOmicsViz,
MWASTools,
netbenchmark,
netbiov,
NetSAM,
nondetects,
nucleoSim,
OncoScore,
PAA,
Path2PPI,
PathNet,
pathview,
pepXMLTab,
PGA,
PhenStat,
Prize,
proBAMr,
proFIA,
proteoQC,
PureCN,
qpgraph,
quantro,
QuartPAC,
RBGL,
rBiopaxParser,
Rcade,
rcellminer,
rCGH,
Rcpi,
RCy3,
RGraph2js,
Rgraphviz,
rgsepd,
riboSeqR,
ROntoTools,
ropls,
RTN,
RTNduals,
rTRM,
samExploreR,
sangerseqR,
SANTA,
sapFinder,
segmentSeq,
SeqArray,
seqPattern,
seqTools,
SeqVarTools,
SICtools,
sigsquared,
SIMAT,
similaRpeak,
SIMLR,
SNPRelate,
SpacePAC,
sparseDOSSA,
specL,
STATegRa,
STRINGdb,
TCC,
TIN,
ToPASeq,
trackViewer,
traseR,
TRONCO,
Uniquorn
Package Archives
Follow
Installation instructions to use this
package in your R session.
Source Repository
git clone https://git.bioconductor.org/packages/BiocGenerics