To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNORfeeder")

In most cases, you don't need to download the package archive at all.

CNORfeeder

DOI: 10.18129/B9.bioc.CNORfeeder

Integration of CellNOptR to add missing links

Bioconductor version: Release (3.5)

This package integrates literature-constrained and data-driven methods to infer signalling networks from perturbation experiments. It permits to extends a given network with links derived from the data via various inference methods and uses information on physical interactions of proteins to guide and validate the integration of links.

Author: F.Eduati

Maintainer: F.Eduati <eduati at ebi.ac.uk>

Citation (from within R, enter citation("CNORfeeder")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNORfeeder")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNORfeeder")
PDF R Script Main vignette:Playing with networks using CNORfeeder
PDF Reference Manual
Text NEWS

Details

Version 1.16.0
In Bioconductor since BioC 2.12 (R-3.0) (4.5 years)
License GPL-3
Depends R (>= 2.15.0), CellNOptR(>= 1.4.0), graph
Imports
LinkingTo
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Windows Binary CNORfeeder_1.16.0.zip
Mac OS X 10.11 (El Capitan) CNORfeeder_1.16.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/CNORfeeder
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

AltStyle によって変換されたページ (->オリジナル) /