To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IntEREst")

In most cases, you don't need to download the package archive at all.

IntEREst

DOI: 10.18129/B9.bioc.IntEREst

Intron-Exon Retention Estimator

Bioconductor version: Release (3.5)

This package performs Intron-Exon Retention analysis on RNA-seq data (.bam files).

Author: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Dario Greco <dario.greco at helsinki.fi>, Mikko Frilander <Mikko.Frilander at helsinki.fi>

Maintainer: Ali Oghabian <Ali.Oghabian at Helsinki.Fi>, Mikko Frilander <Mikko.Frilander at helsinki.fi>

Citation (from within R, enter citation("IntEREst")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("IntEREst")

Documentation

HTML R Script IntEREst, Intron Exon Retention Estimator
PDF Reference Manual

Details

Version 1.0.0
In Bioconductor since BioC 3.5 (R-3.4) (0.5 years)
License GPL-2
Imports seqLogo, Biostrings, GenomicFeatures, IRanges, seqinr, limma, graphics, grDevices, stats, utils, grid, methods, DBI, RMySQL, GenomicAlignments, BiocParallel, BiocGenerics
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package IntEREst_1.0.0.tar.gz
Windows Binary IntEREst_1.0.0.zip
Mac OS X 10.11 (El Capitan) IntEREst_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/IntEREst
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