To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

In most cases, you don't need to download the package archive at all.

RCytoscape

DOI: 10.18129/B9.bioc.RCytoscape

Display and manipulate graphs in Cytoscape

Bioconductor version: Release (3.5)

Interactvive viewing and exploration of graphs, connecting R to Cytoscape.

Author: Paul Shannon

Maintainer: Paul Shannon <pshannon at systemsbiology.org>

Citation (from within R, enter citation("RCytoscape")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RCytoscape")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("RCytoscape")
PDF R Script RCytoscape Overview
PDF Reference Manual
Text README
Text NEWS

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 1.26.0
In Bioconductor since BioC 2.7 (R-2.12) (7 years)
License GPL-2
Depends R (>= 2.14.0), graph(>= 1.31.0), XMLRPC (>= 0.2.4)
Imports methods, XMLRPC, BiocGenerics
LinkingTo
Suggests RUnit
SystemRequirements
Enhances
URL http://rcytoscape.systemsbiology.net
Depends On Me
Imports Me categoryCompare, NCIgraph, RamiGO
Suggests Me mmnet
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RCytoscape_1.26.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone https://git.bioconductor.org/packages/RCytoscape
Package Short Url http://bioconductor.org/packages/RCytoscape/
Package Downloads Report Download Stats

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