To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proteoQC")

In most cases, you don't need to download the package archive at all.

proteoQC

DOI: 10.18129/B9.bioc.proteoQC

An R package for proteomics data quality control

Bioconductor version: Release (3.5)

This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at genomics.cn>, Laurent Gatto <lg390 at cam.ac.uk>

Maintainer: Bo Wen <wenbo at genomics.cn>

Citation (from within R, enter citation("proteoQC")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("proteoQC")

Documentation

HTML R Script 00 proteoQC introduction
PDF Reference Manual
Text NEWS

Details

biocViews MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.12.3
In Bioconductor since BioC 3.0 (R-3.1) (3 years)
License LGPL-2
Depends R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown
LinkingTo
Suggests RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics
SystemRequirements
Enhances
URL https://github.com/wenbostar/proteoQC
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package proteoQC_1.12.3.tar.gz
Windows Binary proteoQC_1.12.3.zip
Mac OS X 10.11 (El Capitan) proteoQC_1.12.3.tgz
Source Repository git clone https://git.bioconductor.org/packages/proteoQC
Package Short Url http://bioconductor.org/packages/proteoQC/
Package Downloads Report Download Stats

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