To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TransView")

In most cases, you don't need to download the package archive at all.

TransView

DOI: 10.18129/B9.bioc.TransView

Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets

Bioconductor version: Release (3.5)

This package provides efficient tools to generate, access and display read densities of sequencing based data sets such as from RNA-Seq and ChIP-Seq.

Author: Julius Muller

Maintainer: Julius Muller <ju-mu at alumni.ethz.ch>

Citation (from within R, enter citation("TransView")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TransView")

Documentation

To view documentation for the version of this package installed in your system, start R and enter: 

browseVignettes("TransView")
PDF R Script An introduction to TransView
PDF Reference Manual
Text NEWS

Details

biocViews ChIPSeq, Clustering, DNAMethylation, DataImport, GeneExpression, MethylSeq, Microarray, MultipleComparison, RNASeq, Sequencing, Software, Transcription, Visualization
Version 1.20.0
In Bioconductor since BioC 2.11 (R-2.15) (5 years)
License GPL-3
Depends methods, GenomicRanges
Imports BiocGenerics, S4Vectors(>= 0.9.25), IRanges, Rsamtools(>= 1.19.38), zlibbioc, gplots
LinkingTo Rsamtools
Suggests RUnit, pasillaBamSubset
SystemRequirements
Enhances
URL http://bioconductor.org/packages/release/bioc/html/TransView.html
Depends On Me
Imports Me
Suggests Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TransView_1.20.0.tar.gz
Windows Binary TransView_1.20.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) TransView_1.20.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TransView
Package Short Url http://bioconductor.org/packages/TransView/
Package Downloads Report Download Stats

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