This is the released version of graph; for the devel version, see
graph.
graph: A package to handle graph data structures
Bioconductor version: Release (3.22)
A package that implements some simple graph handling capabilities.
Author: R Gentleman [aut], Elizabeth Whalen [aut], W Huber [aut], S Falcon [aut], Jeff Gentry [aut], Paul Shannon [aut], Halimat C. Atanda [ctb] (Converted 'MultiGraphClass' and 'GraphClass' vignettes from Sweave to RMarkdown / HTML.), Paul Villafuerte [ctb] (Converted vignettes from Sweave to RMarkdown / HTML.), Aliyu Atiku Mustapha [ctb] (Converted 'Graph' vignette from Sweave to RMarkdown / HTML.), Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter citation("graph")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("graph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("graph")
Details
Version
1.88.0
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 20.5 years)
License
Artistic-2.0
Imports
stats, stats4, utils
System Requirements
See More
Linking To
Depends On Me
apComplex,
biocGraph,
BioMVCClass,
BioNet,
BLMA,
CellNOptR,
clipper,
CNORfeeder,
EnrichmentBrowser,
GOstats,
GraphAT,
GSEABase,
hypergraph,
keggorthology,
MineICA,
pathRender,
RbcBook1,
RBGL,
RCyjs,
Rgraphviz,
ROntoTools,
SRAdb,
topGO,
vtpnet,
DLBCL,
SNAData,
yeastExpData,
cyjShiny,
dlsem,
graphpcor,
gridGraphviz,
PairViz,
PerfMeas
Imports Me
AnnotationHubData,
BgeeDB,
BiocCheck,
BiocFHIR,
biocGraph,
BiocPkgTools,
biocViews,
bnem,
CAMERA,
Category,
categoryCompare,
chimeraviz,
ChIPpeakAnno,
CHRONOS,
consICA,
CytoML,
DEGraph,
DEsubs,
EnrichDO,
epiNEM,
EventPointer,
fgga,
flowClust,
flowWorkspace,
gage,
GeneNetworkBuilder,
GenomicInteractionNodes,
GraphAT,
graphite,
hyperdraw,
KEGGgraph,
MIRit,
mnem,
MOSClip,
NCIgraph,
netresponse,
OncoSimulR,
ontoProc,
openCyto,
oposSOM,
OrganismDbi,
pathview,
qpgraph,
RCy3,
RGraph2js,
rsbml,
scGraphVerse,
SplicingGraphs,
Streamer,
VariantFiltering,
BioPlex,
abn,
BayesNetBP,
BCDAG,
BiDAG,
BNrich,
ceg,
CePa,
classGraph,
clustNet,
CodeDepends,
cogmapr,
ggm,
gridDebug,
HEMDAG,
net4pg,
netgsa,
NetPreProc,
pcalg,
pcgen,
rags2ridges,
RANKS,
RCPA,
rsolr,
rSpectral,
SEMgraph,
stablespec,
topologyGSA,
tpc,
unifDAG
Suggests Me
anansi,
AnnotationDbi,
DAPAR,
DEGraph,
EBcoexpress,
ecolitk,
gwascat,
KEGGlincs,
MLP,
NetPathMiner,
omXplore,
rBiopaxParser,
RCX,
rTRM,
S4Vectors,
SPIA,
VariantTools,
arulesViz,
bnlearn,
bnstruct,
bsub,
ChoR,
gbutils,
GeneNet,
gMCP,
lava,
loon,
maGUI,
netmeta,
psych,
rEMM,
rPref,
sisal,
textplot,
tidygraph,
zenplots
Links To Me
Package Archives
Follow Installation instructions to use this package in your R session.
Source Repository
git clone https://git.bioconductor.org/packages/graph
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/graph