CHRONOS

This is the released version of CHRONOS; for the devel version, see CHRONOS.

CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis

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DOI: 10.18129/B9.bioc.CHRONOS

Bioconductor version: Release (3.22)

A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.

Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos

Maintainer: Panos Balomenos <balomenos at upatras.gr>

Citation (from within R, enter citation("CHRONOS")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("CHRONOS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CHRONOS")

CHRONOS PDF R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology

Version 1.38.0

In Bioconductor since BioC 3.3 (R-3.3) (9.5 years)

License GPL-2

Depends R (>= 3.5)

Imports XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, igraph, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt, rJava

System Requirements Java version>= 1.7, Pandoc

URL

Suggests RUnit, BiocGenerics, knitr, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package CHRONOS_1.38.0.tar.gz

Windows Binary (x86_64) CHRONOS_1.37.0.zip (64-bit only)

macOS Binary (x86_64) CHRONOS_1.38.0.tgz

macOS Binary (arm64)

Source Repository git clone https://git.bioconductor.org/packages/CHRONOS

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/CHRONOS

Bioc Package Browser https://code.bioconductor.org/browse/CHRONOS/

Package Short Url https://bioconductor.org/packages/CHRONOS/

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