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GenomicInteractionNodes
This is the released version of GenomicInteractionNodes; for the devel version, see GenomicInteractionNodes.
A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data
Bioconductor version: Release (3.22)
The GenomicInteractionNodes package can import interactions from bedpe file and define the interaction nodes, the genomic interaction sites with multiple interaction loops. The interaction nodes is a binding platform regulates one or multiple genes. The detected interaction nodes will be annotated for downstream validation.
Author: Jianhong Ou [aut, cre] ORCID iD ORCID: 0000-0002-8652-2488 , Yarui Diao [fnd]
Maintainer: Jianhong Ou <jou at morgridge.org>
citation("GenomicInteractionNodes")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GenomicInteractionNodes")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GenomicInteractionNodes")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.