ecolitk

This is the released version of ecolitk; for the devel version, see ecolitk.

Meta-data and tools for E. coli

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DOI: 10.18129/B9.bioc.ecolitk

Bioconductor version: Release (3.22)

Meta-data and tools to work with E. coli. The tools are mostly plotting functions to work with circular genomes. They can used with other genomes/plasmids.

Author: Laurent Gautier

Maintainer: Laurent Gautier <lgautier at gmail.com>

Citation (from within R, enter citation("ecolitk")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("ecolitk")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ecolitk")

ecolitk PDF R Script

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, Software, Visualization

Version 1.82.0

In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20.5 years)

License GPL (>= 2)

Depends R (>= 2.10)

Imports Biobase, graphics, methods

System Requirements

URL

Suggests ecoliLeucine, ecolicdf, graph, multtest, affy

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Enhances

Depends On Me

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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ecolitk_1.82.0.tar.gz

Windows Binary (x86_64) ecolitk_1.81.0.zip

macOS Binary (x86_64) ecolitk_1.82.0.tgz

macOS Binary (arm64) ecolitk_1.82.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ecolitk

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ecolitk

Bioc Package Browser https://code.bioconductor.org/browse/ecolitk/

Package Short Url https://bioconductor.org/packages/ecolitk/

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