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affy

This is the released version of affy; for the devel version, see affy.

Methods for Affymetrix Oligonucleotide Arrays


Bioconductor version: Release (3.22)

The package contains functions for exploratory oligonucleotide array analysis. The dependence on tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.

Author: Rafael A. Irizarry <rafa at ds.dfci.harvard.edu>, Laurent Gautier <lgautier at gmail.com>, Benjamin Milo Bolstad <bmb at bmbolstad.com>, and Crispin Miller <cmiller at picr.man.ac.uk> with contributions from Magnus Astrand <Magnus.Astrand at astrazeneca.com>, Leslie M. Cope <cope at mts.jhu.edu>, Robert Gentleman, Jeff Gentry, Conrad Halling <challing at agilixcorp.com>, Wolfgang Huber, James MacDonald <jmacdon at u.washington.edu>, Benjamin I. P. Rubinstein, Christopher Workman <workman at cbs.dtu.dk>, John Zhang

Maintainer: Robert D. Shear <rshear at ds.dfci.harvard.edu>

Citation (from within R, enter citation("affy")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("affy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affy")
1. Primer PDF R Script
2. Built-in Processing Methods PDF R Script
3. Custom Processing Methods PDF R Script
4. Import Methods PDF R Script
Reference Manual PDF
NEWS Text

Details

Version 1.88.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 20.5 years)
License LGPL (>= 2.0)
Depends R (>= 2.8.0), BiocGenerics(>= 0.1.12), Biobase(>= 2.5.5)
Imports affyio(>= 1.13.3), BiocManager, graphics, grDevices, methods, preprocessCore, stats, utils
System Requirements
See More
Suggests tkWidgets(>= 1.19.0), affydata, widgetTools, hgu95av2cdf
Linking To preprocessCore
Enhances
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package affy_1.88.0.tar.gz
Windows Binary (x86_64) affy_1.87.0.zip (64-bit only)
macOS Binary (x86_64) affy_1.88.0.tgz
macOS Binary (arm64) affy_1.88.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/affy
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/affy
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