rBiopaxParser

This is the released version of rBiopaxParser; for the devel version, see rBiopaxParser.

Parses BioPax files and represents them in R

Bioconductor version: Release (3.22)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <frank.kramer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("rBiopaxParser")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("rBiopaxParser")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rBiopaxParser")

rBiopaxParser Vignette PDF R Script

Reference Manual PDF

NEWS Text

Version 2.50.0

In Bioconductor since BioC 2.12 (R-3.0) (12.5 years)

License GPL (>= 2)

Depends R (>= 4.0), data.table

Imports XML

System Requirements

Linking To

Enhances

Depends On Me

Imports Me

Links To Me

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) rBiopaxParser_2.49.0.zip

macOS Binary (x86_64) rBiopaxParser_2.50.0.tgz

macOS Binary (arm64) rBiopaxParser_2.50.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/rBiopaxParser

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rBiopaxParser

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