This is the released version of Rgraphviz; for the devel version, see
Rgraphviz.
Provides plotting capabilities for R graph objects
Bioconductor version: Release (3.22)
Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.
Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]
Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>
Citation (from within R, enter citation("Rgraphviz")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Rgraphviz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rgraphviz")
A New Interface to Plot Graphs Using Rgraphviz
PDF
R Script
Details
Version
2.54.0
In Bioconductor since
BioC 1.6 (R-2.1) or earlier (> 20.5 years)
License
EPL
Depends
R (>= 2.6.0), methods, utils,
graph, grid
Imports
stats4, graphics, grDevices
System Requirements
optionally Graphviz (>= 2.16), USE_C17
See More
Linking To
Enhances
Depends On Me
biocGraph,
BioMVCClass,
CellNOptR,
MineICA,
netresponse,
paircompviz,
pathRender,
ROntoTools,
SplicingGraphs,
maEndToEnd,
dlsem,
gridGraphviz
Imports Me
apComplex,
biocGraph,
bnem,
chimeraviz,
CytoML,
DEGraph,
EnrichDO,
EnrichmentBrowser,
flowWorkspace,
GeneNetworkBuilder,
GOstats,
hyperdraw,
KEGGgraph,
mirIntegrator,
MIRit,
mnem,
OncoSimulR,
ontoProc,
paircompviz,
pathview,
qpgraph,
TRONCO,
abn,
agena.ai,
BCDAG,
BiDAG,
bnpa,
bnRep,
ceg,
CePa,
classGraph,
cogmapr,
graphpcor,
ontologyPlot,
SEMgraph,
stablespec,
WayFindR
Suggests Me
a4,
altcdfenvs,
annotate,
Category,
CNORfeeder,
CNORfuzzy,
DEGraph,
flowCore,
geneplotter,
GlobalAncova,
globaltest,
GSEABase,
MLP,
NCIgraph,
RBGL,
rBiopaxParser,
safe,
SPIA,
SRAdb,
Streamer,
topGO,
ViSEAGO,
vtpnet,
NCIgraphData,
SNAData,
arulesViz,
BayesNetBP,
bnlearn,
bnstruct,
bsub,
ChoR,
CodeDepends,
gbutils,
GeneNet,
HEMDAG,
iTOP,
kst,
lava,
loon,
maGUI,
micd,
multiplex,
netmeta,
ParallelPC,
pcalg,
pchc,
pks,
psych,
relations,
rEMM,
rPref,
rSpectral,
SCCI,
sisal,
textplot,
tm,
topologyGSA,
tpc,
unifDAG,
zenplots
Links To Me
Package Archives
Follow Installation instructions to use this package in your R session.
Source Repository
git clone https://git.bioconductor.org/packages/Rgraphviz
Source Repository (Developer Access)
git clone git@git.bioconductor.org:packages/Rgraphviz