anansi
This is the released version of anansi; for the devel version, see anansi.
Annotation-Based Analysis of Specific Interactions
Bioconductor version: Release (3.22)
Studies including both microbiome and metabolomics data are becoming more common. Often, it would be helpful to integrate both datasets in order to see if they corroborate each others patterns. All vs all association is imprecise and likely to yield spurious associations. This package takes a knowledge-based approach to constrain association search space, only considering metabolite-function pairs that have been recorded in a pathway database. This package also provides a framework to assess differential association.
Author: Thomaz Bastiaanssen [aut, cre] ORCID iD ORCID: 0000-0001-6891-734X , Thomas Quinn [aut] ORCID iD ORCID: 0000-0003-0286-6329 , Giulio Benedetti [aut] ORCID iD ORCID: 0000-0002-8732-7692 , Tuomas Borman [aut] ORCID iD ORCID: 0000-0002-8563-8884 , Leo Lahti [aut] ORCID iD ORCID: 0000-0001-5537-637X
Maintainer: Thomaz Bastiaanssen <thomazbastiaanssen at gmail.com>
citation("anansi")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("anansi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("anansi")
Details
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Package Archives
Follow Installation instructions to use this package in your R session.