KEGGREST

This is the released version of KEGGREST; for the devel version, see KEGGREST.

Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)

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DOI: 10.18129/B9.bioc.KEGGREST

Bioconductor version: Release (3.22)

A package that provides a client interface to the Kyoto Encyclopedia of Genes and Genomes (KEGG) REST API. Only for academic use by academic users belonging to academic institutions (see ). Note that KEGGREST is based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

Author: Dan Tenenbaum [aut], Bioconductor Package Maintainer [aut, cre], Martin Morgan [ctb], Kozo Nishida [ctb], Marcel Ramos [ctb], Kristina Riemer [ctb], Lori Shepherd [ctb], Jeremy Volkening [ctb]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("KEGGREST")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("KEGGREST")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGREST")

Accessing the KEGG REST API HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Annotation, KEGG, Pathways, Software, ThirdPartyClient

Version 1.50.0

In Bioconductor since BioC 2.12 (R-3.0) (12.5 years)

License Artistic-2.0

Depends R (>= 3.5.0)

Imports methods, httr, png, Biostrings

System Requirements

URL https://bioconductor.org/packages/KEGGREST

Bug Reports https://github.com/Bioconductor/KEGGREST/issues

Suggests RUnit, BiocGenerics, BiocStyle, knitr, markdown

Linking To

Enhances

Depends On Me ROntoTools, Hiiragi2013

Imports Me ADAM, adSplit, AnnotationDbi, attract, BiocSet, ChIPpeakAnno, CNEr, EnrichmentBrowser, FELLA, funOmics, gage, ginmappeR, MetaboDynamics, MetaboSignal, MWASTools, PADOG, pairkat, pathview, SBGNview, SMITE, terapadog, transomics2cytoscape, YAPSA, WayFindR

Suggests Me anansi, Category, categoryCompare, dmGsea, gatom, GenomicRanges, globaltest, iSEEu, MLP, padma, rGREAT, RTopper, SomaScan.db, CALANGO, ggpicrust2, maGUI, phoenics, ReporterScore, scDiffCom

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package KEGGREST_1.50.0.tar.gz

Windows Binary (x86_64) KEGGREST_1.49.1.zip

macOS Binary (x86_64) KEGGREST_1.50.0.tgz

macOS Binary (arm64) KEGGREST_1.50.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/KEGGREST

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/KEGGREST

Bioc Package Browser https://code.bioconductor.org/browse/KEGGREST/

Package Short Url https://bioconductor.org/packages/KEGGREST/

Package Downloads Report Download Stats