iSEEu

This is the released version of iSEEu; for the devel version, see iSEEu.

iSEE Universe

Platform availability badge Ranking badge Support activity badge Years in BioConductor badge Build results badge Last commit badge Dependency count badge

DOI: 10.18129/B9.bioc.iSEEu

Bioconductor version: Release (3.22)

iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.

Author: Kevin Rue-Albrecht [aut, cre] ORCID iD ORCID: 0000-0003-3899-3872 , Charlotte Soneson [aut] ORCID iD ORCID: 0000-0003-3833-2169 , Federico Marini [aut] ORCID iD ORCID: 0000-0003-3252-7758 , Aaron Lun [aut] ORCID iD ORCID: 0000-0002-3564-4813 , Michael Stadler [ctb]

Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>

Citation (from within R, enter citation("iSEEu")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("iSEEu")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iSEEu")

Panel universe HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization

Version 1.22.0

In Bioconductor since BioC 3.11 (R-4.0) (5.5 years)

License MIT + file LICENSE

Depends iSEE, iSEEhex

Imports methods, S4Vectors, IRanges, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2 (>= 3.4.0), DT, stats, colourpicker, shinyAce

System Requirements

URL https://github.com/iSEE/iSEEu

Bug Reports https://github.com/iSEE/iSEEu/issues

Suggests scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, KEGGREST, knitr, igraph, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0), covr

Linking To

Enhances

Depends On Me

Imports Me iSEEfier

Suggests Me

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iSEEu_1.22.0.tar.gz

Windows Binary (x86_64) iSEEu_1.21.0.zip

macOS Binary (x86_64) iSEEu_1.22.0.tgz

macOS Binary (arm64) iSEEu_1.22.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/iSEEu

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iSEEu

Bioc Package Browser https://code.bioconductor.org/browse/iSEEu/

Package Short Url https://bioconductor.org/packages/iSEEu/

Package Downloads Report Download Stats