TreeSummarizedExperiment

This is the released version of TreeSummarizedExperiment; for the devel version, see TreeSummarizedExperiment.

TreeSummarizedExperiment: a S4 Class for Data with Tree Structures

Bioconductor version: Release (3.22)

TreeSummarizedExperiment has extended SingleCellExperiment to include hierarchical information on the rows or columns of the rectangular data.

Author: Ruizhu Huang [aut, cre] ORCID iD ORCID: 0000-0003-3285-1945 , Felix G.M. Ernst [ctb] ORCID iD ORCID: 0000-0001-5064-0928 , Mark Robinson [ctb] ORCID iD ORCID: 0000-0002-3048-5518 , Tuomas Borman [ctb] ORCID iD ORCID: 0000-0002-8563-8884

Maintainer: Ruizhu Huang <ruizhuRH at gmail.com>

Citation (from within R, enter citation("TreeSummarizedExperiment")):

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
BiocManager::install("TreeSummarizedExperiment")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TreeSummarizedExperiment")

1. Introduction to TreeSE HTML R Script

2. Combine TSEs HTML R Script

Reference Manual PDF

Version 2.18.0

In Bioconductor since BioC 3.9 (R-3.6) (6.5 years)

License GPL (>=2)

Depends R (>= 3.6.0), SingleCellExperiment, S4Vectors(>= 0.23.18), Biostrings

System Requirements

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Follow Installation instructions to use this package in your R session.

Windows Binary (x86_64) TreeSummarizedExperiment_2.17.1.zip

Source Repository git clone https://git.bioconductor.org/packages/TreeSummarizedExperiment

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TreeSummarizedExperiment

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Old Source Packages for BioC 3.22 Source Archive