菊池 誠

論文

• Phenotype selection due to mutational robustness

  Macoto Kikuchi

  PLOS ONE 19(11) e0311058-e0311058 2024年11月18日 査読有り筆頭著者最終著者責任著者
• 遺伝子制御ネットワークの変異に対する頑健性と 双安定性の進化の定量評価:レアイベントサンプリング の手法

  菊池誠

  生物物理 62(6) 360-364 2022年12月 査読有り招待有り筆頭著者最終著者責任著者
• Evolution enhances mutational robustness and suppresses the emergence of a new phenotype: A new computational approach for studying evolution

  Tadamune Kaneko, Macoto Kikuchi

  PLOS Computational Biology 18(1) e1009796-e1009796 2022年1月19日 査読有り最終著者責任著者
• Emergence of cooperative bistability and robustness of gene regulatory networks

  Shintaro Nagata, Macoto Kikuchi

  PLOS Computational Biology 16(6) e1007969-e1007969 2020年6月29日 査読有り最終著者責任著者
• Scaling from Circuit Experiment to Real Traffic Based on Optimal Velocity Model

  A.Nakayama, M.Kikuchi, A.Shibata, Y.Sugiyama, S.Tadaki, S.Yukawa

  Traffic and Granular Flow '15 523-530 2016年9月 査読有り
• Characterizing and distinguishing free and jammed traffic flows from the distribution and correlation of experimental speed data

  Shin-ichi Tadaki, Macoto Kikuchi, Akihiro Nakayama, Akihiro Shibata, Yuki Sugiyama, Satoshi Yukawa

  NEW JOURNAL OF PHYSICS 18 83022 2016年8月 査読有り
• Quantitative explanation of circuit experiments and real traffic using the optimal velocity model

  Akihiro Nakayama, Macoto Kikuchi, Akihiro Shibata, Yuki Sugiyama, Shin-Ichi Tadaki, Satoshi Yukawa

  New Journal of Physics 18(4) 43040 2016年4月1日 査読有り
• The interplay of intrinsic disorder and macromolecular crowding on α-synuclein fibril formation

  Nobu C. Shirai, Macoto Kikuchi

  The Journal of Chemical Physics 144(5) 055101-055101 2016年2月7日 査読有り
• The interplay of intrinsic disorder and macromolecular crowding on alpha-synuclein fibril formation

  Nobu C. Shirai, Macoto Kikuchi

  JOURNAL OF CHEMICAL PHYSICS 144(5) 55101 2016年2月 査読有り最終著者
• Nucleotide-dependent structural fluctuations and regulation of microtubule-binding affinity of KIF1A

  Ryo Kanada, Fumiko Takagi, Macoto Kikuchi

  PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS 83(5) 809-819 2015年5月 査読有り最終著者
• Numerous but Rare: An Exploration of Magic Squares

  Akimasa Kitajima, Macoto Kikuchi

  PLOS ONE 10(5) e0125062 2015年5月 査読有り最終著者責任著者
• Critical density of experimental traffic jam

  Shin-Ichi Tadaki, Macoto Kikuchi, Minoru Fukui, Akihiro Nakayama, Katsuhiro Nishinari, Akihiro Shibata, Yuki Sugiyama, Taturu Yosida, Satoshi Yukawa

  Traffic and Granular Flow, 2013 505-511 2015年 査読有り
• Structural flexibility of intrinsically disordered proteins induces stepwise target recognition

  Nobu C. Shirai, Macoto Kikuchi

  JOURNAL OF CHEMICAL PHYSICS 139(22) 225103 2013年12月 査読有り
• Phase transition in traffic jam experiment on a circuit

  Shin-ichi Tadaki, Macoto Kikuchi, Minoru Fukui, Akihiro Nakayama, Katsuhiro Nishinari, Akihiro Shibata, Yuki Sugiyama, Taturu Yosida, Satoshi Yukawa

  NEW JOURNAL OF PHYSICS 15 103034 2013年10月 査読有り
• Short Polypeptide with Metastable Structures (準安定状態を持つ短いポリペプチド)

  松下 勝義, 菊池誠

  Interdisciplinary Information Sciences 19(1) 29-34 2013年8月 査読有り
• Characterizing and distinguishing free and jammed traffic flows from the distribution and correlation of experimental speed data

  Shin-ichi Tadaki, Macoto Kikuchi, Akihiro Nakayama, Akihiro Shibata, Yuki Sugiyama, Satoshi Yukawa

  New Journal of Physics 18 083022 2013年7月 査読有り
• Robustness leads close to the edge of chaos in coupled map networks: toward the understanding of biological networks

  Nen Saito, Macoto Kikuchi

  NEW JOURNAL OF PHYSICS 15 53037 2013年5月 査読有り最終著者
• Frustration-induced protein intrinsic disorder (競合誘起のタンパク質天然変性)

  Katsuyoshi Matsushita, Macoto Kikuchi

  J. Chem. Phys. 138(10) 105101 2013年3月 査読有り最終著者
• Multicanonical simulation of coupled folding and binding of intrinsically disordered protein using an Ising-like protein model

  Katsuyoshi Matsushita, Macoto Kikuchi

  24TH IUPAP CONFERENCE ON COMPUTATIONAL PHYSICS (IUPAP-CCP 2012) 454 12034 2013年 査読有り
• Multicanonical simulation of the Domb-Joyce model and the Go model: new enumeration methods for self-avoiding walks

  Nobu C. Shirai, Macoto Kikuchi

  24TH IUPAP CONFERENCE ON COMPUTATIONAL PHYSICS (IUPAP-CCP 2012) 454 12039 2013年 査読有り