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ComplexHeatmap (development version)

ComplexHeatmap

This is the development version of ComplexHeatmap; for the stable release version, see ComplexHeatmap.

Make Complex Heatmaps

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DOI: 10.18129/B9.bioc.ComplexHeatmap

Bioconductor version: Development (3.23)

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu [aut, cre] ORCID iD ORCID: 0000-0002-7395-8709

Maintainer: Zuguang Gu <z.gu at dkfz.de>

Citation (from within R, enter citation("ComplexHeatmap")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("ComplexHeatmap")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ComplexHeatmap")

complex_heatmap.html HTML

Most probably asked questions HTML R Script

Reference Manual PDF

NEWS Text

LICENSE Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Sequencing, Software, Visualization

Version 2.27.0

In Bioconductor since BioC 3.1 (R-3.2) (10.5 years)

License MIT + file LICENSE

Depends R (>= 4.0.0), methods, grid, graphics, stats, grDevices

Imports circlize (>= 0.4.14), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), png, digest, IRanges, matrixStats, foreach, doParallel, codetools

System Requirements

URL https://github.com/jokergoo/ComplexHeatmap https://jokergoo.github.io/ComplexHeatmap-reference/book/

See More

Suggests testthat (>= 1.0.0), knitr, markdown, dendsort, jpeg, tiff, fastcluster, EnrichedHeatmap, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges, gridtext, pheatmap (>= 1.0.12), gridGraphics, gplots, rmarkdown, Cairo, magick

Linking To

Enhances

Depends On Me AMARETTO, EnrichedHeatmap, InteractiveComplexHeatmap, multistateQTL, recoup, sechm, countToFPKM

Imports Me airpart, ASURAT, barbieQ, bettr, BindingSiteFinder, BioNERO, blacksheepr, BloodGen3Module, BreastSubtypeR, BulkSignalR, CATALYST, CCPlotR, celda, CeTF, chevreulPlot, ClustAll, COCOA, cola, COTAN, CTexploreR, cytoKernel, Damsel, dar, DEGreport, diffcyt, diffUTR, dinoR, dominoSignal, ELViS, epiregulon.extra, fCCAC, FLAMES, gCrisprTools, GeneTonic, GenomicPlot, GenomicSuperSignature, geyser, gmoviz, GRaNIE, gVenn, hermes, hoodscanR, HybridExpress, iModMix, InterCellar, iSEE, MAPFX, markeR, MesKit, mitology, MOMA, monaLisa, Moonlight2R, MOSClip, MPAC, MultiRNAflow, muscat, musicatk, MWASTools, nipalsMCIA, pathlinkR, PathoStat, PeacoQC, pipeComp, POMA, PRONE, RFLOMICS, RiboCrypt, RUCova, scafari, scRNAseqApp, segmenter, shinyDSP, signifinder, simona, simplifyEnrichment, singleCellTK, sparrow, SPONGE, TBSignatureProfiler, TMSig, ViSEAGO, Xeva, YAPSA, spatialLIBD, autoGO, bulkAnalyseR, cellGeometry, coda4microbiome, conos, DeSciDe, DiscreteGapStatistic, GAPR, GSSTDA, karyotapR, mineSweepR, missoNet, MitoHEAR, MKomics, ogrdbstats, Path.Analysis, PCAPAM50, pkgndep, RepeatedHighDim, rKOMICS, RNAseqQC, scITD, SeuratExplorer, sigQC, SingleCellComplexHeatMap, spatialGE, spiralize, tidyHeatmap, TransProR, visxhclust, wilson

Links To Me

Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package ComplexHeatmap_2.27.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64) ComplexHeatmap_2.27.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/ComplexHeatmap

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/ComplexHeatmap

Bioc Package Browser https://code.bioconductor.org/browse/ComplexHeatmap/

Package Short Url https://bioconductor.org/packages/ComplexHeatmap/

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