BulkSignalR

This is the development version of BulkSignalR; for the stable release version, see BulkSignalR.

Infer Ligand-Receptor Interactions from bulk expression (transcriptomics/proteomics) data, or spatial transcriptomics

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DOI: 10.18129/B9.bioc.BulkSignalR

Bioconductor version: Development (3.23)

Inference of ligand-receptor (LR) interactions from bulk expression (transcriptomics/proteomics) data, or spatial transcriptomics. BulkSignalR bases its inferences on the LRdb database included in our other package, SingleCellSignalR available from Bioconductor. It relies on a statistical model that is specific to bulk data sets. Different visualization and data summary functions are proposed to help navigating prediction results.

Author: Jacques Colinge [aut] ORCID iD ORCID: 0000-0003-2466-4824 , Jean-Philippe Villemin [cre] ORCID iD ORCID: 0000-0002-1838-5880

Maintainer: Jean-Philippe Villemin <jpvillemin at gmail.com>

Citation (from within R, enter citation("BulkSignalR")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BulkSignalR")

For older versions of R, please refer to the appropriate Bioconductor release.