- Home
- Bioconductor 3.23
- Software Packages
- orthogene (development version)
orthogene
This is the development version of orthogene; for the stable release version, see orthogene.
Interspecies gene mapping
Bioconductor version: Development (3.23)
`orthogene` is an R package for easy mapping of orthologous genes across hundreds of species. It pulls up-to-date gene ortholog mappings across **700+ organisms**. It also provides various utility functions to aggregate/expand common objects (e.g. data.frames, gene expression matrices, lists) using **1:1**, **many:1**, **1:many** or **many:many** gene mappings, both within- and between-species.
Author: Brian Schilder [cre] ORCID iD ORCID: 0000-0001-5949-2191
Maintainer: Brian Schilder <brian_schilder at alumni.brown.edu>
citation("orthogene")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("orthogene")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("orthogene")
Details
See More
Package Archives
Follow Installation instructions to use this package in your R session.