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iModMix (development version)

iModMix

This is the development version of iModMix; for the stable release version, see iModMix.

Integrative Modules for Multi-Omics Data

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DOI: 10.18129/B9.bioc.iModMix

Bioconductor version: Development (3.23)

The iModMix network-based method offers an integrated framework for analyzing multi-omics data, including metabolomics, proteomics, and transcriptomics data, enabling the exploration of intricate molecular associations within heterogeneous biological systems.

Author: Isis Narvaez-Bandera [aut, cre] ORCID iD ORCID: 0000-0001-7320-618X

Maintainer: Isis Narvaez-Bandera <isis.narvaez at upr.edu>

Citation (from within R, enter citation("iModMix")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("iModMix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iModMix")

Publication-ready integration omics data including unidentified metabolites HTML R Script

Reference Manual PDF

NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, GeneExpression, Metabolomics, Network, PrincipalComponent, Proteomics, Software, Transcriptomics, Visualization

Version 1.1.0

In Bioconductor since BioC 3.22 (R-4.5) (< 6 months)

License GPL-3

Depends R (>= 4.5.0)

Imports config (>= 0.3.2), golem (>= 0.4.1), shiny (>= 1.7.5), ComplexHeatmap, DT, RColorBrewer, WGCNA, corrplot, cowplot, dynamicTreeCut, ggplot2, glassoFast, impute, purrr, stringr, tidyr, visNetwork, shinyBS, httr, dplyr, stats, iModMixData, SummarizedExperiment, ExperimentHub(>= 2.99.0)

System Requirements

URL https://github.com/biodatalab/iModMix

Bug Reports https://github.com/biodatalab/iModMix/issues

See More

Suggests testthat (>= 3.0.0), ggfortify, shinyWidgets, pROC, tuneR, knitr, curl, readxl, reshape2, vroom, here, enrichR, rmarkdown

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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iModMix_1.1.0.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64) iModMix_1.1.0.tgz

macOS Binary (arm64) iModMix_1.1.0.tgz

Source Repository git clone https://git.bioconductor.org/packages/iModMix

Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iModMix

Bioc Package Browser https://code.bioconductor.org/browse/iModMix/

Package Short Url https://bioconductor.org/packages/iModMix/

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