GenomeInfoDbData

This is the development version of GenomeInfoDbData; for the stable release version, see GenomeInfoDbData.

Species and taxonomy ID look up tables used by GenomeInfoDb

Platform availability badge Ranking badge Support activity badge

DOI: 10.18129/B9.bioc.GenomeInfoDbData

Bioconductor version: Development (3.23)

Files for mapping between NCBI taxonomy ID and species. Used by functions in the GenomeInfoDb package.

Author: Bioconductor Core Team

Maintainer: Bioconductor Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("GenomeInfoDbData")):

Installation

To install this package, start R (version "4.6") and enter:


if (!require("BiocManager", quietly = TRUE))
 install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("GenomeInfoDbData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews AnnotationData, Organism

Version 1.2.15

License Artistic-2.0

Depends R (>= 3.5.0)

Imports

System Requirements

URL

Suggests

Linking To

Enhances

Depends On Me EuPathDB

Imports Me countsimQC, igvShiny, multiHiCcompare

Suggests Me AnnotationHubData, Bioc.gff, GenomeInfoDb, HubPub, ORFik, OrganismDbi, orthogene, proActiv, proBAMr, QuasR, ribosomeProfilingQC, systemPipeR, txcutr, txdbmaker, GenomicState

Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GenomeInfoDbData_1.2.15.tar.gz

Windows Binary (x86_64)

macOS Binary (x86_64)

macOS Binary (arm64)

Package Short Url https://bioconductor.org/packages/GenomeInfoDbData/

Package Downloads Report Download Stats